Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01816 ATGGCTCCGTTTCCGTCTGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGATGAAGAGGAAGAAGAGGACGAAGAAGAAGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGACGCCGCGTCATGTATTGCCGTCGCGGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTTGGGAATCAGGTTAAGGAATTCTCCGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTAAAGTTTGATTACCATCGGCCGATGAAGGCAGTTGCCTTGGATCCAGATTATGCAAAGAAAATGTCCAGGAGATTTGTCGCTGGAGGTTTGGCTGGTCATTTATATTTGAATTCAAAGAAATGGCTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCATGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTTACATTTATTGAAAAACCACGAGGAAGCCCACGCCCTGAGCTTTTACTTCCTCACCTGGTCTGGCAGGATGATACCCTCTTGGTAATTGGATGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAATTCACCAAAGGGCAGCGAATGGGTCGTTCAGACAGGTTCCTCTGTCTGGTGTGGCCCAGGTGGATATCGTGGCATCTTTCCAAACCAGCTATTTCATCTCAGGGCTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGATGGAGATAAGGATTTTAGTAGCTCAGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCAACAGATGCTCTGCCAGTACATGGGTTCGAGCATTACAGAGCGAAAGACTACTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAATGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCATTGGCTGTGGTTGAATCTGGCCAGGGACGAAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATCGTGGAAAGAAAATACAGTGAAGCAGCATCTCTCTGTCCCAAGTTGCTTCGGGGATCAGCTCCAGCTTGGGAGAGATGGGTTTTCCATTTTGCACATCTTCGTCAACTTCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGACACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCTTCTTTTCATAAGGATCTCTTGTCAACTGTAAAATCCTGGCCTTCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCGTCCATGACTGATTCACTTAAGGAGGCACTGGCAGAGTTGTATGTAATCAATGGGCAATATGAGAAGGCCTTCTTGTTGTATGCCGATCTTTTGAAACCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCGTGGAAAGGTTGTTCAATTAATGATGCTAGATTGCAAGCGTGCAGTTCCTTTGTTGATCCAAAATAGGGACTTAATAAGTCCACCCGAAGTTGTGAAGCAACTTCTAAATGCCGATGATAAGAGTGATCGTAGATATTTTTTACATTTATATCTTCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTACGCAGACTATGATCCAAAGATGCTACTACCTTTTCTCCGTAGCAGTCAGCACTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGGGACCTATTGAGGGAGCAAGTCTTCATTTTAGGAAGGATGGGAAACTCAAAACAAGCCCTAGCTGTTATTATAAACCATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAGCTTTGGGAAGAATTGATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTGTTGGAGCACACGGTTGGAAATCTGGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGGCATGGGTGCAATGATATCCTTAAGGCGGATTGTGTCAATCTTTTAATCAAGTATTACAAAGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGACACGGGTTAAAATGAGTGACACTCGTGCTTCTCAACTATTTGAGAAATCCCCGAATCTGAGAACTATGGAGATGAAGTCAAAGACTCGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCATTTTCTATTCAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAACTTGTCTCATGGATTCATCTTACACTAGTAGTAACAAGAAAGAAACCACGTCCCTAAAGGCAGGAATGTATGATGATTACAATGGTTATGAGGACGATGCTAGCGATGACGCTGAAGATGAAGAAACCAAATCGGGTGGCCCACGAATGCGCTGTATATTGTGTACTACTGCTTCTAGTTGA 2868 0.4362 MAPFPSENGVEGDDEREEEDEEEEEDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFDYHRPMKAVALDPDYAKKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRVTFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTIHQRAANGSFRQVPLSGVAQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEDGDKDFSSSAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSAPAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKAFLLYADLLKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPPEVVKQLLNADDKSDRRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINHLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGVSLGNEEDETRVKMSDTRASQLFEKSPNLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSSNKKETTSLKAGMYDDYNGYEDDASDDAEDEETKSGGPRMRCILCTTASS 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01816 955 SMART ring_2 870 950 IPR001841 -
Viun11g01816 955 Gene3D - 8 276 IPR015943 GO:0005515
Viun11g01816 955 SMART CLH_2 609 756 IPR000547 GO:0006886|GO:0016192
Viun11g01816 955 Coils Coil 16 38 - -
Viun11g01816 955 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 282 - -
Viun11g01816 955 Pfam Region in Clathrin and VPS 609 752 IPR000547 GO:0006886|GO:0016192
Viun11g01816 955 Gene3D Tetratricopeptide repeat domain 544 819 IPR011990 GO:0005515
Viun11g01816 955 MobiDBLite consensus disorder prediction 1 41 - -
Viun11g01816 955 FunFam Vacuolar protein sorting-associated protein 41 homolog 550 815 - -
Viun11g01816 955 SUPERFAMILY RING/U-box 863 907 - -
Viun11g01816 955 SUPERFAMILY WD40 repeat-like 56 249 IPR036322 GO:0005515
Viun11g01816 955 MobiDBLite consensus disorder prediction 11 37 - -
Viun11g01816 955 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 756 IPR000547 GO:0006886|GO:0016192
Viun11g01816 955 PANTHER VACUOLAR PROTEIN SORTING VPS41 13 950 IPR045111 GO:0006623
Viun11g01816 955 SMART WD40_4 172 208 IPR001680 GO:0005515
Viun11g01816 955 SMART WD40_4 84 123 IPR001680 GO:0005515
Viun11g01816 955 CDD RING-H2_Vps8 868 902 - -
Viun11g01816 955 PIRSF Vps41 1 911 IPR016902 GO:0034058|GO:0046907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01816 K20184 - gmx:100804340 1780.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01816 11 34209311 34226299 Viun11g01816 11 34209311 34226299 ECH