Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01792 ATGTTCCAGAAGCGTTTTCGTCTCCACCTCCTCCCTCTGTCGAAGAAGCACGCTCAGTTTCCGCTTCCACGTAACGCGGTTACCCTCTCCGACGGAGTTCAACAACCCTCAGACGCCACCATAGCCCATCTGGTCCTCGAATCAGACCCAGTCACTCTCTCCGAGGCCCTATCCAAGCCCACGATCCAATGGGCCCCCGAGCTCGTGAACCAGGTCCTGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTTCAATTCTTCAAACACCTGGACCGCCACCCTTCGTACATCCACTGCGCCTCGTCGTTCGACCACGCCATCGACATCGCGGCCCGCATGCACGACTACAACGCCGCATGGGCCTTAGTGGGCCGCATGCGATCTCTCCGCCGCGGCCCAACTCCCCGAACCTTCGCCATCCTCGCCGAGCGCTACGCCGCGAATGGAAAACCCCACCGCGCCGTCAGAACCTTCATCTCCATGCACGAGCATGGTTGCCGCCAGGACCTGAACTCATTCAACACCGTCCTCGACGTCCTCTGCAAATCTAGGCGCGTGGAAATGGCACACACCTTGCTCAAAACGTTCCGATCCAGATTCAAACTCGATTGCGTGAGCTACAACATAATCGCAAACGGTTATTGCCTAATCAAACGCACGCCGATGGCGTTGCAGGTTCTGAAGGAAATGGTGCAGCGAGGGATAAACCCTACGATGGTCACGTACAACACATTGCTGAAAGGTTATTTTCGGAGTAATCAGATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAGTGCGAGATTGATGTTGTGACTTACACGACTGTGATTCACGGGTTTGGGGTGGCGGGTGAGGTTAAGAAATCTCGTAGGGTTTTTGATGAGATGGTGAAGGAGGGTGTGGCTCCTAGTGTCGCCACGTGTAATGCTTTGATTCAGGTTTTGTGTAAGAAGGACAGCGTGGAGAATGCAGTAGTGGTTTTTGAGGAGATGTTGAGAAAGGGGTTGTGTGCGCCGAATGTGGTTACTTACAACGTTGTTATCAGAGGTTTTTGTCATGTTGGGGACATGGAGAGGGCATTAGGGTTTATGGGGAGAATGGGGGAACATGGTTTGAGGGCTTCTGTTCAGACATATAATGTTGTGATTAGGTACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGATGTTTGAGAAGATGAGGGATGAGCCTTGCTTGCCCAATTTGGATACTTACAATGTTCTGATCAGTGCCATGTTTTTGAGGAAGAAATCTGAAGATTTGGTGGTGGCTGGGAAATTGTTGATGGAGATGGTTGATAGAGGGTTCTTGCCGCGGAAGTTTACTTTCAATAGGGTGTTGAATGGACTTGTTATTACTGGGAATCAGGATTTTGCCAAAGAGATTCTGAGAATGCAGAGCAGGTGTGGCCGTGTTGTTCGGCGTTTGAAACTGTGA 1476 0.5142 MFQKRFRLHLLPLSKKHAQFPLPRNAVTLSDGVQQPSDATIAHLVLESDPVTLSEALSKPTIQWAPELVNQVLKRLWNHGPKALQFFKHLDRHPSYIHCASSFDHAIDIAARMHDYNAAWALVGRMRSLRRGPTPRTFAILAERYAANGKPHRAVRTFISMHEHGCRQDLNSFNTVLDVLCKSRRVEMAHTLLKTFRSRFKLDCVSYNIIANGYCLIKRTPMALQVLKEMVQRGINPTMVTYNTLLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGEVKKSRRVFDEMVKEGVAPSVATCNALIQVLCKKDSVENAVVVFEEMLRKGLCAPNVVTYNVVIRGFCHVGDMERALGFMGRMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEMFEKMRDEPCLPNLDTYNVLISAMFLRKKSEDLVVAGKLLMEMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCGRVVRRLKL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01792 491 Gene3D Tetratricopeptide repeat domain 301 370 IPR011990 GO:0005515
Viun11g01792 491 Pfam PPR repeat 140 166 IPR002885 -
Viun11g01792 491 Pfam PPR repeat 205 235 IPR002885 -
Viun11g01792 491 Pfam PPR repeat 172 195 IPR002885 -
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Viun11g01792 491 Gene3D Tetratricopeptide repeat domain 199 300 IPR011990 GO:0005515
Viun11g01792 491 Gene3D Tetratricopeptide repeat domain 371 489 IPR011990 GO:0005515
Viun11g01792 491 Gene3D Tetratricopeptide repeat domain 51 198 IPR011990 GO:0005515
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Viun11g01792 491 Pfam PPR repeat family 307 357 IPR002885 -
Viun11g01792 491 Pfam PPR repeat family 379 425 IPR002885 -
Viun11g01792 491 Pfam PPR repeat family 237 284 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 275 308 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 346 378 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 172 198 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 382 414 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Viun11g01792 491 NCBIfam pentatricopeptide repeat 240 274 IPR002885 -
Viun11g01792 491 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 57 432 - -
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Viun11g01792 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01792 Viun-Chr11 33908696 33912139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01792 131 486 Glycosyltransferase AT1G05670 28.412 1.36e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01792 - - gmx:100808784 837.025