Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01748 ATGAAGGAAACGAGGCCCCATGTCCATGCACCTGGGGAAGAAGAGAAGGTTATGACAAGGAAGCAGAAAGCTGAGTCCAAGGCACATGAAGTGGAGCATTCTCCTAAGAAGGCCAAGGTGGAAAATGAAGATGGTCATGTCAACGGAAAAACTGTGGCTGATGTTGCCGAAGAATATGATGAGTTTTGCAAAGCCACAAAGGAGCACCTTCCTTTGGAGCAAATGAAAGAGATTCTAGAGGCTAATGGCCTTGATTCTTCTGGCCCTGATCTCGAAATTACACGAAGATGCCAAGACTTGCTGTTTTATGGTCCATTGGACAAGTGCTCTGTTTGCAATGGGAGTTTGGAGTTTGATGGCAGACGCTATGTCTGCAGAGGGTTCTATAGTGAGTGGGCTAGTTGCATTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCGTTAAGCTACCTGATTCTGTTCAGAACTCGGTGCCTTCAGATTTGCTAAAGAAGTATCAGGACCCAAGTCAGAGACCTCACAGGGATCTAGGCTTAGCTGAAAAACCCTTTACCGGGATGATGATATCTCTGATGGGTCGTCTTACTCGGACACATCATCATTGGAAAACAGCTATTGAAAAGCATGGAGGGAAAGTGGCAAACTCTATACTCGGGGCTACTTGTTTGGTAGCTTCACCTGCTGAGCGAGAACGTGGTGGCACGTCCAAACTTGCAGAAGCCATGGAGAGAGGTATACCAGTGGTTAGAGAGGCTTGGCTGCTTGACAGCATTGAAAAGCAAGAACCACAGCCTTTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTGGATGGCAAGGGAATTCCCTGGGACAAACAGGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAACTTTATGGGAAGAGAGGGGTCTACAAAGATACCAAGTTGCAGGAACAAGGGGGAAAGATATTTGAAAAAGATGGGATATTATACAACTGTGCCTTCTCCCTTTGCGACCAAGGACGCGGACTGAACGACTACTGTATCATGCAACTGATCGTTGTTCCAGAAAATCGTTTGCATTTGTACTTTAAGAAAGGGAGAGTTGGCGATGATCCAAATGCAGAGGAGCGATTAGAAGAGTGGGACAACGAAGGCAGTTGTCTGAAAGAGTTTGCGAGACTCTTCGAGGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTCTATCCCATTGACATGGATGATGGAGTTGAAGTTAGACACGGAGCATTAGGTCTTCGGCAGCTGGGGATAGCAGCAACACACTGTAAACTTGAGCCTTTGGTTGCAAATTTTATGAAAGTTTTATGCAGCCAGGAGATATACAAGTATGCATTGATGGAGATGGGTTACGACTCTCCGGACCTTCCAATAGGAATGGTAACAAATCTTCATCTGAAAAGATGTGAGGACGTTCTCTTAGAATTCATAGAAAAGGTGAAATCATTGAAAGAAACTGGGCCCAAGGCTGAGGCTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTCTTATGCATTCCACAAGGCCTTTCAATTTTAGAGATTATCAAGAGATTGCAGACCATGCTGCAGCTGCCTTGGAGGGGGCGAGAGACATAACCCTCGCTTCTCACCTCATAGGAGACATGACTGGCTCAACCATCGATGATCCATTATCAGAGACATACAAGAAATTGGGTTGCTCAATTACTCCCCTGGACAAAAGTTCGAATGATTATCAGATGATTGTGAAATATCTTGAAAATACTTATGAGCCAGTTAAAGTTGGTGAAATTGATTACGGGGTGTCAGTGGAAAACATTTTTTCGGTGCAAACAGGTGGCTGCCCTTCCTATGAAGACATAGTTAAACTGCCAAATAAAGTTCTTTTATGGTGTGGAACACGAAGCTCAAACCTTTTGAGGCACTTGAAAATAGGATTCTCGGAAGCAATATGCTCACTACCGGTTCCGGGTTATATGTTTGGCAAAGCTATAGTCTGCTCCGATGCTGCAGCAGAGGCTGCACGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATCGCTTCCCTGGGGAACGAGATTACCGAGTTTAAAAGCCCACCCGAGGATACTTCATCTTTGGAGGAAAAGAAGCTTGGAGTGAAGGGACTGGGGAAGAAGAAAACAGATGAATCAGAACACTTTGTTTGGAAAGATGATATAAAAGTTCCTTGCGGTAAACTAGTCGCCTCAGATCATCAAGATAGCCCCCTGGAATATAACGAGTATGCTGTCTACGATCCTAAGCAGGCACGCATAAGTTACTTGGTGGGAGTGAAGTATGAAGAGAAAGGGGTGGAGATTGACACGGCCGAGTAA 2433 0.4509 MKETRPHVHAPGEEEKVMTRKQKAESKAHEVEHSPKKAKVENEDGHVNGKTVADVAEEYDEFCKATKEHLPLEQMKEILEANGLDSSGPDLEITRRCQDLLFYGPLDKCSVCNGSLEFDGRRYVCRGFYSEWASCIFSTRNPPRKQEPVKLPDSVQNSVPSDLLKKYQDPSQRPHRDLGLAEKPFTGMMISLMGRLTRTHHHWKTAIEKHGGKVANSILGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLLDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFEKDGILYNCAFSLCDQGRGLNDYCIMQLIVVPENRLHLYFKKGRVGDDPNAEERLEEWDNEGSCLKEFARLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEDVLLEFIEKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGARDITLASHLIGDMTGSTIDDPLSETYKKLGCSITPLDKSSNDYQMIVKYLENTYEPVKVGEIDYGVSVENIFSVQTGGCPSYEDIVKLPNKVLLWCGTRSSNLLRHLKIGFSEAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITEFKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDPKQARISYLVGVKYEEKGVEIDTAE 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01748 810 SUPERFAMILY WGR domain-like 296 425 IPR036930 -
Viun11g01748 810 SUPERFAMILY BRCT domain 183 283 IPR036420 -
Viun11g01748 810 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 39 177 IPR047572 GO:0008270
Viun11g01748 810 MobiDBLite consensus disorder prediction 1 44 - -
Viun11g01748 810 SMART BRCT_7 182 262 IPR001357 -
Viun11g01748 810 ProSiteProfiles BRCT domain profile. 180 272 IPR001357 -
Viun11g01748 810 FunFam Poly [ADP-ribose] polymerase 52 176 - -
Viun11g01748 810 PANTHER DNA LIGASE 10 798 - -
Viun11g01748 810 Pfam Poly(ADP-ribose) polymerase catalytic domain 595 798 IPR012317 GO:0003950
Viun11g01748 810 SMART PADR1_2 93 146 IPR012982 GO:0008270
Viun11g01748 810 Pfam BRCA1 C Terminus (BRCT) domain 182 259 IPR001357 -
Viun11g01748 810 Gene3D - 585 801 - -
Viun11g01748 810 Pfam Poly(ADP-ribose) polymerase, regulatory domain 448 581 IPR004102 GO:0003950
Viun11g01748 810 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 447 583 IPR036616 GO:0003950
Viun11g01748 810 MobiDBLite consensus disorder prediction 143 179 - -
Viun11g01748 810 ProSiteProfiles PARP catalytic domain profile. 575 806 IPR012317 GO:0003950
Viun11g01748 810 SUPERFAMILY ADP-ribosylation 584 801 - -
Viun11g01748 810 CDD parp_like 447 798 - -
Viun11g01748 810 Gene3D - 50 174 - -
Viun11g01748 810 Gene3D - 443 584 IPR036616 GO:0003950
Viun11g01748 810 ProSiteProfiles PARP alpha-helical domain profile. 447 566 IPR004102 GO:0003950
Viun11g01748 810 SMART WGR_cls 331 414 IPR008893 -
Viun11g01748 810 CDD BRCT_PARP1 185 260 - -
Viun11g01748 810 FunFam Poly [ADP-ribose] polymerase 585 801 - -
Viun11g01748 810 ProSiteProfiles WGR domain profile. 320 420 IPR008893 -
Viun11g01748 810 Pfam PADR1 (NUC008) domain 95 145 IPR012982 GO:0008270
Viun11g01748 810 CDD WGR_PARP1_like 321 427 - -
Viun11g01748 810 Pfam WGR domain 331 410 IPR008893 -
Viun11g01748 810 Gene3D BRCT domain 180 278 IPR036420 -
Viun11g01748 810 FunFam Poly [ADP-ribose] polymerase 442 584 - -
Viun11g01748 810 MobiDBLite consensus disorder prediction 151 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01748 Viun-Chr11 33500215 33504806 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01748 K10798 - gmx:100788978 1529.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01748 11 33500215 33504806 Viun11g01748 11 33500215 33504806 ECH