Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01686 ATGGGAAGTGTTTCAGTAGTTTCCTCTGCAGTTGCCAGAAGGTTAGAAGGGAAGGTGGCGTTGATCACAGGTGCAGCAAGTGGCATTGGGGAGAGTACGGCGAGACTAATGGCGAAACATGGAGCCAAAGTAGTGATCGCAGATATCCAAGACGAGTTAGGTCACTCGGTTTCCAAGGACATAGACTCCTCCATCTACGTCCACTGCGACGTCACAAAAGAGGAACACGTGGAACGTGCCGTGGACACCGCCGTTTCTAGGTTCGGGAAACTGGACATCATGCACAACAACGCAGGGACCATAGAAGTGTGGAACCCCAGCATTATGCACAACAAAAAGTCCGATTTCGATGAGGTCATTAACGTCAACTTGGTCGGTGTCTTCCTCGGAATGAAACATGCGGCGAGGGTAATGGCGCCTTCTCGGCGTGGCAGCATAATCGCCACCTCAAGCGTGTGTGGACGCATAGGTGGCGCGGCTTCACACGCTTACACGTGCTCGAAGCATGGCGTTGTGGGGCTGGTGCGAAACGCTGCAGTGGAGCTTGGACCCTTGGGAATACGTGTGAATTGTGTGTCTCCTTACGGAGTTCCAACGCCGTTGAGTAAGAAGTTTCTGAACACTGATGATGAGGGGGTTGCTGCACTTTATTCGAATCTGAAAGGTGTTACTGTGAAACCCGAGGATGTGGCTGAAGCTGTGGTTTACTTGGGGAGTGATGAGTCCAGGTATGTTACTGGGCATGACCTCGTTGTAGATGGAGGCTTCACTGTTGTGAACGCTGGTTTGTGTGTGTTTGAGTCGTTAGTGTAG 813 0.5166 MGSVSVVSSAVARRLEGKVALITGAASGIGESTARLMAKHGAKVVIADIQDELGHSVSKDIDSSIYVHCDVTKEEHVERAVDTAVSRFGKLDIMHNNAGTIEVWNPSIMHNKKSDFDEVINVNLVGVFLGMKHAARVMAPSRRGSIIATSSVCGRIGGAASHAYTCSKHGVVGLVRNAAVELGPLGIRVNCVSPYGVPTPLSKKFLNTDDEGVAALYSNLKGVTVKPEDVAEAVVYLGSDESRYVTGHDLVVDGGFTVVNAGLCVFESLV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01686 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Viun11g01686 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Viun11g01686 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Viun11g01686 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Viun11g01686 270 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Viun11g01686 270 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Viun11g01686 270 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Viun11g01686 270 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Viun11g01686 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Viun11g01686 270 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Viun11g01686 270 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Viun11g01686 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 259 IPR036291 -
Viun11g01686 270 FunFam Short-chain dehydrogenase reductase 3 262 - -
Viun11g01686 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 260 - -
Viun11g01686 270 Gene3D - 4 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01686 Viun-Chr11 33095699 33096824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01686 11 258 Acyl Lipid Metabolism Gene Families AT1G24360 32.283 1.03e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01686 - - vra:106780137 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01686 11 33095699 33096824 Viun11g01686 11 33095699 33096824 ECH