Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01670 ATGAACCCAATGGTAACAACAATAGCAGTAACAGTGGTGCTATATGTGACAGTTCTTGAAAGTGTGAAGGGATTTCTGCTACACACGAATGATAGGTGGATTGTGGATGAAAATGGGAAGAGGGTGAAGCTAGCATGTGTGAACTGGGTGTCCCATTTGGATGCTGCTGTTGCAGAGGGTTTAAATCAGCAACCTTTGGATATGATTTCCAAGAGTATCAAGTCTATGGGCTTCAACTGTGTGAGACTCACATGGCCACTTCTCTTGCTCACCAATCACTCTCTTGCTTCTCTCACTGTCAGAAACTCTTTCCAAAACCTTGGCCTTCTTCAATCCATCAATGATGTTCAAGCCCTCAACCCCTCCATCATTGATCTTCCCATCATCAAAGCTTACCAGGAAGTGGTGAAGAGCTTAGGAGACAACGATGTAATGGTGATCTTGGACAATCACGTGACACAACCAGGATGGTGCTGCGGTAACATGGATGGCAATGGCTTCTTTGGGGACCAATATTTTGATCCTGACCTTTGGATTATGGGTCTTACCAATATGGCTACACTTTTCAAAGGAGTGAGTAATGTGGTCGGCATGAGCTTGAGGAATGAGTTACGAGGTCCCAAACAAAATGTCAACCAATGGTACAGGTATATGCCAAAGGGAGCAGAAGCAGTGCATGCAGCAAATCCAGAAGTTCTTGTGATTCTTTCTGGTCTAAACTTTGACACTGACCTATCATTCATGAAAGAGGGAGCAGTGAAACTGAGCTTCAATGAAAAACTGGTGTTGGAACTGCACTGGTACAGCTTCAGTGAGGGTCAACCACGGGCCTCAAGGAATGCAAACCAAATGTGTGGGGAAGTCACAGCAAATGTGATGAGAAGGGCAGGCTTCTTATTGGGCCAAGGCCTGCCATTGTTTGTCAGTGAGTTTGGGCTGGACTTGAGAGGCTTAGATGCCAATGACAATACCTACCTAAACTGCTTCATGGCATTTGCAGCCCAATTTGACTTGGACTGGGCCTTGTGGACACTTGGTGGGAGTTACTACATAAGACAAGGAGTTGTTGGAATGAATGAGTATTATGGTGTTCTCAATTCAGATTGGAGTGAGGTTAGAAACCTCAGTTTCTTGCAGAGAATCTCAGCTATTCAAATCCCCTTTCAAGGGCCAGGTTTATCAGAAGCAAAACCATACAAAGTGATTTTTCACCCTTTGACAGGTTTTTGCATCTTAAGAAAATCACAGGTTGAGGCTTTGAGGTTGGGATCTTGTTCTGATTCTGATGAATGGGAGTACACAGACCAAAACACACTATCGATAAAGGGTACCAATTTCTGTTTACAAGCAGAGGGAGAAGGGAAACAAGCGAAAATTGGGAATATATGTTCAACTCTTAATTCAAGATGGGAAATGCTCTCTGATTCAAAGATGCATCTATCAACTCAGATCAATAACTCTTCTGGAATGTGTCTTGATGTAGACACCAATAACATCATTGTCACCAACACTTGCAAATGTCTAACCAAAGATAACAACACTTGTGAACCTGCAAGCCAATGGTTCAAACTTGTTGACAGCACAAGGAATTAA 1593 0.4319 MNPMVTTIAVTVVLYVTVLESVKGFLLHTNDRWIVDENGKRVKLACVNWVSHLDAAVAEGLNQQPLDMISKSIKSMGFNCVRLTWPLLLLTNHSLASLTVRNSFQNLGLLQSINDVQALNPSIIDLPIIKAYQEVVKSLGDNDVMVILDNHVTQPGWCCGNMDGNGFFGDQYFDPDLWIMGLTNMATLFKGVSNVVGMSLRNELRGPKQNVNQWYRYMPKGAEAVHAANPEVLVILSGLNFDTDLSFMKEGAVKLSFNEKLVLELHWYSFSEGQPRASRNANQMCGEVTANVMRRAGFLLGQGLPLFVSEFGLDLRGLDANDNTYLNCFMAFAAQFDLDWALWTLGGSYYIRQGVVGMNEYYGVLNSDWSEVRNLSFLQRISAIQIPFQGPGLSEAKPYKVIFHPLTGFCILRKSQVEALRLGSCSDSDEWEYTDQNTLSIKGTNFCLQAEGEGKQAKIGNICSTLNSRWEMLSDSKMHLSTQINNSSGMCLDVDTNNIIVTNTCKCLTKDNNTCEPASQWFKLVDSTRN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01670 530 Gene3D Glycosidases 24 386 - -
Viun11g01670 530 SUPERFAMILY Ricin B-like lectins 397 523 IPR035992 -
Viun11g01670 530 CDD RICIN 399 505 IPR000772 -
Viun11g01670 530 ProSiteProfiles Lectin domain of ricin B chain profile. 426 524 - -
Viun11g01670 530 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 13 529 - -
Viun11g01670 530 Pfam Cellulase (glycosyl hydrolase family 5) 61 346 IPR001547 GO:0004553|GO:0071704
Viun11g01670 530 SUPERFAMILY (Trans)glycosidases 27 374 IPR017853 -
Viun11g01670 530 Gene3D - 402 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01670 Viun-Chr11 32994221 32997831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01670 25 529 Glycoside Hydrolase AT1G13130 59.252 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01670 - - gmx:100816102 865.529