LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01650	ATGGGAAAGAAGAACGAGAATCAGAAAACGGGGCTAGGTCGAGCCCTGGTGAAGCAGCACAATCAGATGATTCAACAGAGCAAGGACAAGTCTCGCTTCTACAAAAAGAAGGTTCTCGAATCCTTCACCGAAGTCTCCGACATCGACGCCGTCATCGAACAATCCCTCGAGTCTCTCCCCGAACACGCCGTCGCCTCCACCACAATCATAAGCCTGGACCCTGCCGAAATGACGCCTGAAGAAACGAGGAAGCAGGAGGAGGCGCTACACGCCAGCAGCCTCCGAGTCCCGCGCCGGCCGCCGTGGACTCCCGACATGTCCCCCCAGGAGCTTCACGACAGCGAAACGCAAGCTTTTTTGGTTTGGCGTCGCAGTTTAGCGAGGCTCGAGGAGAATAAGAAGCTTGTCCTTACACCGTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGTGTTGTTGAACGTAGTGATCTGCTTGTTATGGTTGTCGATTCACGAGATCCTCTGTTTTATCGTTGTCCAGACCTTGAGGCTTATGCACGGGAGGTTGATGAACATAAACGCACATTGCTTCTGGTTAATAAGGCAGATCTTTTACCTGCTTCTGTCAGAGAGAAATGGGCAGCATATTTTCGTGCTCATGATATTCTCTTCATCTTCTGGTCTGCTAAAGCTGCTACGGCAGCCCTGGAGGGCAAAAACCTTGGTTCATCATGGGATGATGATAACATGGGGAGAACTAATAGCCCAGACACAAAGATATACGGAAGGGACGAGCTATTGGCCCGCCTGCAATCAGAGGCAGAAGAGATAGTGAACAGGAGGAGGAATTCAGGCACCTCTGATGCAGGGCCATCTAACATTAAATCACCTGCTGAAAATACTGCTGGCAGCTCATCATCTAGTCATGTAGTTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATCAATGCTCTGGTTGGTGAAAAGCGGACTGGTGTTACCTCCACCCCTGGGAAAACAAAGCACTTTCAGACATTAATTATCTCTGATAAGCTGACCCTCTGTGATTGTCCCGGATTAGTTTTTCCATCTTTCTCTAGCTCAAGATATGAGATGATTGCTTGTGGGGTGTTGCCCATTGATAGGATGACTGAACACCGGGAATCTATCCAAGTTGTGGCCGATAGAGTCCCAAGACATCTCATCGAACAGATTTACAGGATAACGCTTCCTAAACCTAAGCCATACGAGTCCCAATCCCGTCCCCCTCTAGCATCTGAACTTTTAAGAGCATACTGTGGTTCCCGTGGGTATGTTGCTTCTAGTGGACTCCCTGATGAAACTAGGGGCACCCGTCAGATACTGAAAGATTACATTGATGGGAAGCTGCCTCACTATGAACTGCCTCCAGGTACATCAGAAGAGGAACATGCTTTGGAAGATCCCACCAGACACGACTCAGTTGACTTGCATGCATCAGATTCGTCTGATGTTGAAGATTCTTCAGATGTCGAGAGTGGTCTTGCACCAAATCTTGAGCATGTCTTGGATGACCTCAGTTCATTCGACATGGCTAATGGACTTGCTCCAAAAAGTACGACTCTTAAGAAGCCCAAGGCATCTCATAAACATCATAAAAAGCCGCAGAGGAAAAAAGATCGTGCCTGGAGAGCAGGAAACGATGATGCTGATGGGACGCCGGTTGTAAGATTCTTTCAGAAACCAGCTAACACAGGTTCTCTGAAGGATTGA	1749	0.482	MGKKNENQKTGLGRALVKQHNQMIQQSKDKSRFYKKKVLESFTEVSDIDAVIEQSLESLPEHAVASTTIISLDPAEMTPEETRKQEEALHASSLRVPRRPPWTPDMSPQELHDSETQAFLVWRRSLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASVREKWAAYFRAHDILFIFWSAKAATAALEGKNLGSSWDDDNMGRTNSPDTKIYGRDELLARLQSEAEEIVNRRRNSGTSDAGPSNIKSPAENTAGSSSSSHVVVGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESIQVVADRVPRHLIEQIYRITLPKPKPYESQSRPPLASELLRAYCGSRGYVASSGLPDETRGTRQILKDYIDGKLPHYELPPGTSEEEHALEDPTRHDSVDLHASDSSDVEDSSDVESGLAPNLEHVLDDLSSFDMANGLAPKSTTLKKPKASHKHHKKPQRKKDRAWRAGNDDADGTPVVRFFQKPANTGSLKD	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01650	582	CDD	HSR1_MMR1	146	362	-	-
	Viun11g01650	582	PRINTS	GTP1/OBG GTP-binding protein family signature	353	368	IPR006073	GO:0005525
	Viun11g01650	582	PRINTS	GTP1/OBG GTP-binding protein family signature	307	327	IPR006073	GO:0005525
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	274	300	-	-
	Viun11g01650	582	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	395	IPR027417	-
	Viun11g01650	582	Pfam	50S ribosome-binding GTPase	307	363	IPR006073	GO:0005525
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	524	582	-	-
	Viun11g01650	582	FunFam	Large subunit GTPase 1	367	468	-	-
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	1	29	-	-
	Viun11g01650	582	ProSiteProfiles	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile.	147	362	IPR030378	GO:0005525
	Viun11g01650	582	Gene3D	-	146	363	IPR027417	-
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	461	505	-	-
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	278	300	-	-
	Viun11g01650	582	PANTHER	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	1	556	IPR043358	GO:0003924
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	535	552	-	-
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	461	497	-	-
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	88	110	-	-
	Viun11g01650	582	FunFam	Large subunit GTPase 1	146	363	-	-
	Viun11g01650	582	MobiDBLite	consensus disorder prediction	12	28	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01650	Viun-Chr11	32713808	32717579	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01650	K14539		-	gmx:100817523	1001.89

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun11g01650	11	32713808	32717579	Viun11g01650	11	32713808	32717579	ECH