Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01594 ATGGCTAAGAGCTCGTTCAAAATGGAACACCCTCTCGAGAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCTGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTAACTGTTGGGCAGTTTGTGTATGTGGTGAGGAAGAGAATCAAGCTGAGCCCCGAGAAGGCAATCTTCATTTTTGTGAAGAACATCTTACCACCAACTGCGGCAATGATGTCTGCAATATACGAGGAAAACAAAGACGAAGATGGATTCCTATATATGACTTACAGTGGAGAGAACACATTTGGACTTGTGTTCTGA 363 0.4242 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLVF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01594 120 CDD Ubl_ATG8 12 114 - -
Viun11g01594 120 FunFam Autophagy-related protein 1 117 - -
Viun11g01594 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Viun11g01594 120 Gene3D - 1 118 - -
Viun11g01594 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
Viun11g01594 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01594 Viun-Chr11 32340136 32342385 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01594 K08341 - gmx:100301895 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01594 11 32340136 32342385 Viun11g01594 11 32340136 32342385 ECH