Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01590 ATGAGCAACAGGATGCGCGTGACATTTACCGTGGCCACGGTAGCCGTCGCAGCTGCCATCATATCCATTTTCTTGGCCGCGCGAAGGCGCAGGAAGCACGACTCCTCTTCTAGTTCGTGCTATTTGCATTCCGAACAGAAACCACAGAGTGCATTCAAACGCGTATTATCGGACAATTCTTACACTCCGTTCAAGCATCTCAGCAACGACGAGGATGCTTCCCATTCGCATCCGTTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTCCGTCTGAAATTGAATTTGGAACTGAGATCGTAGACTTGGAAATGAAAGATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGTGTTGAGCGAGGAGAGGTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCAAGGCTTTACAGCATTAGTTCAGATTTCTACACTGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCATGTTTTCGCCAATCCTTCAATATGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCACATATACGTTGTTAACCTCTTTGATACTTCAAAGGCATGCGAGCTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGATTGGAGACAGCGCCCTCTCTCGGCAGAAATGGTACATTATGCCCGAACGGATGCACACTTTCTGTTGTATATTGCGAATTGTCTGATCAATGAACTCAAACAACTGGACAACGAAAACTCTTCCAGTGACAAATTCCATTTTGTTCTTGAGGCTTGTCGGCGTTCAAACACGATATGTTTACAACTTTTCACAAAGGAGATTGAAGCATATCCTGGGGAATATTCTGCATTATCATTATTTTCGCGTCAAGTGAGCAGTCATGGTTCTACGTCTATATCAAATGAAACCCAGAATATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCACTCTGAAATACACAAGATCATAGCCCAGGCTGACATCAATATGGAAATGGGTGTGAACTCTTTCATCATTTCCCCATCTCCTGTTGTTTGCAGTCACCTCACTGATATCTATCATATGCTTGCAAACAAGTTGGTTAATGATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTATAGGTCAAAATGGGAATTGTCCGCTTTCTATATTCAATTATGCTTTGTTGATAAACAATAATCTAAGACCTAATTTAGCCCATAAACAACTGGGCCCAAAAAATTCTAAACAATATTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGTAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGATGAGGATCCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGACGAAGACAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAGGTCGCACATGCTGCCGCAGAAAAGTACAAGAGAAAAATAGCTGTTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCAGGTCAAAAGACTGAAAAACAAATTGAAGAGAGTGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTTTACGCCATGGACCAAGAATGCCTCTCAATCGTCGAGAAGAACTGACGGAGATTATAAAGAGATATTATGGAGGAAGGGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACGCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAATATTCTACAGGGAGTACTGCCACAGTACCAGAACAGAATTTTGATGCCGAATTAAAAGCTGATGTGGATGACTTAAAAGCCGATACCCATGAAGGCTCATATGCAAATGAAGTAGATACGGAGCTTTTAATAAGAAAAGATGATTTTAGAAACTCCACTTCAGCTTCTGATGTTACAGTTAACGGACCTGACTCTGCAACTTTGAATGAAAATGCGATTACAGTTGCAACTGCAGATTGCAATGAAGGCGGTGACTCTGCTGCTGTAGATGTTGATAACAGCTGTCTGAACAGAACACAAACAAATGGACTTGATGACTTGTCTTGTTCCCCCAATGATGAAAAATCTATGCATACCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGAGTATGGCGAAGATGGCATTCGAGAGTTTTGTCAGAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCTGGTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGGGAGTTCAGTGTGTACAAACCTGACAAGAGAGAAGCTTCAGCAACTGCAGATTAA 2775 0.4151 MSNRMRVTFTVATVAVAAAIISIFLAARRRRKHDSSSSSCYLHSEQKPQSAFKRVLSDNSYTPFKHLSNDEDASHSHPFEAEITALLKTPPSEIEFGTEIVDLEMKDSYVWVHTETQLKELVDVLSEERFFAVDTEQHSLRSFQGFTALVQISTLEKDYLVDTIALHDFMGILRHVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACELLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDNENSSSDKFHFVLEACRRSNTICLQLFTKEIEAYPGEYSALSLFSRQVSSHGSTSISNETQNIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIHKIIAQADINMEMGVNSFIISPSPVVCSHLTDIYHMLANKLVNDDDDIYSVILQKCIGQNGNCPLSIFNYALLINNNLRPNLAHKQLGPKNSKQYSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLRRVVHPGQKTEKQIEESGVSPLQLRTAAMALLRHGPRMPLNRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKYSTGSTATVPEQNFDAELKADVDDLKADTHEGSYANEVDTELLIRKDDFRNSTSASDVTVNGPDSATLNENAITVATADCNEGGDSAAVDVDNSCLNRTQTNGLDDLSCSPNDEKSMHTEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIREFCQRWRQVFVDAVKPRFLPGGWDVKHSGRRDFGEFSVYKPDKREASATAD 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01590 924 MobiDBLite consensus disorder prediction 828 852 - -
Viun11g01590 924 Gene3D - 45 313 IPR036397 GO:0003676
Viun11g01590 924 SUPERFAMILY Ribonuclease H-like 47 293 IPR012337 -
Viun11g01590 924 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 36 916 IPR045092 GO:0000175|GO:0000467
Viun11g01590 924 Pfam HRDC domain 342 388 IPR002121 GO:0003676
Viun11g01590 924 ProSiteProfiles HRDC domain profile. 337 417 IPR002121 GO:0003676
Viun11g01590 924 SMART 35exoneu6 109 277 IPR002562 GO:0003676|GO:0006139|GO:0008408
Viun11g01590 924 Gene3D HRDC domain 328 432 IPR044876 -
Viun11g01590 924 Pfam 3'-5' exonuclease 109 276 IPR002562 GO:0003676|GO:0006139|GO:0008408
Viun11g01590 924 SUPERFAMILY HRDC-like 334 421 IPR010997 GO:0000166|GO:0044237
Viun11g01590 924 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 46 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01590 Viun-Chr11 32258220 32265648 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01590 K12951 - gmx:100791485 1498.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01590 11 32258220 32265648 Viun11g01590 11 32258220 32265648 ECH