Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01535 ATGGAAACAAGATCTGCAAAACGCAAGAAAATGGCTCAGATTGTAGCGAACGATGCCAAAGCAGCCACGGATCGGATCAGTGATCTCCCTGATGCAGTTCTTCATCAAATTCTTTTCCTTCTTCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCTAAAAGATGGAGACATTTATGGTGCACTTTCCCTGACCTTGATTTCAGAACCCTTGACCCATTTCAAATCTCTTCCAAAAATGTTAAATTTTTGGAGTTTGAAAAGCCAAGGCAACCTTTGGATTCGTCGCGGATGGATTTCATCACACAAGTTCTCTCCATTCGTGACAAACACTCGGACATTAGGGTTCTTTGTTTTCGTGCACGTTTGAGTTTTTCACGGTTAAATGGTTTGATTCGTAGGGCTATTAGGCATAACGTTAGAGAGCTTGATATCGAAGCGTCAACAGTGTGTACAGATGATTACTTCAACTTTCCTAGATGTATTATTGGGAGTGAATCGCTAAGGGTTTTGAAACTAAGATCAGGTTTTCGTTTGCCTCCATCATCAGTTATGAGGCATGGCTTTCAATCTCTTAAAACCTTGTCTCTTTCCTTCGTTATTCTGAACAACCAACCTTCTCTCACTGATTTGTTCTCTGAATCATCCTTTCCTCTTCTTCAAACTCTCACCCTTGATGCATGTTTCGGGTTGAAATATCTTCGTGTTGGATGTAGGGCCCTTGTAGATTTGAACTTAGAGAAGTGTTATGCGCTTGAGGGTTTGGATATCTCGTGTGCAAAACTTGAGAGAATGAGATTGGTGAAATGTTTTGTTGCCTATAGTGAGAAGAGTTGGGTGAAGATCAATGCACCAATGCTTCAACATTTGTGTTGGCAGCATAATGCAGTCACTGATATGGCTATGTTTGAGCCTTGGAATGTGTTGCATGAGGTCACAGTTGGTTTCTTTATATTGACGAGAGATAATAGTCAGAGTAAGCTTCAAAGTGCTGTTGAATTATTATCTGGACTGTCTCGTGTGCATTCCTTGTGTCTTGAAAGGCAAACTATTGAGATTCTGTCAAATAATCACCTCCTTTTTCAGCCATTTTATGATCTTAAACATTTAGAACTGCAAACTGGTTTCAACAAAAGTAATGTTCCGGGATTGACATGTCTATTCAAGAGCTCTCCCACTCTCAACACTTTGATTCTCAAGATCATTCATGAATATAGGATTGAAAGAAAAGAATGGAATAGAGACTTGTGGGACGTGACTATCACAGAGGGGGAACAGTATTGGGAGTCTCAGATCAGAACTCTGGAGTCTTTTCTACAACACTTGAAAGTGGTAAAAATTCATGGATTTCTTGATTATGAGAATGAAGTTGCACTTGCAAAGTTTCTTCTTAAGCATGGAAAAGCCTTGGAAGAAATGGTATTACACACAGGAAATTGCAATGCAAGAGACACTCTTAGGCGACAAAAGATAAGGTCACAAATGAGGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTGGCCTTTCAGTAG 1533 0.3973 METRSAKRKKMAQIVANDAKAATDRISDLPDAVLHQILFLLPIKCVAQMSILSKRWRHLWCTFPDLDFRTLDPFQISSKNVKFLEFEKPRQPLDSSRMDFITQVLSIRDKHSDIRVLCFRARLSFSRLNGLIRRAIRHNVRELDIEASTVCTDDYFNFPRCIIGSESLRVLKLRSGFRLPPSSVMRHGFQSLKTLSLSFVILNNQPSLTDLFSESSFPLLQTLTLDACFGLKYLRVGCRALVDLNLEKCYALEGLDISCAKLERMRLVKCFVAYSEKSWVKINAPMLQHLCWQHNAVTDMAMFEPWNVLHEVTVGFFILTRDNSQSKLQSAVELLSGLSRVHSLCLERQTIEILSNNHLLFQPFYDLKHLELQTGFNKSNVPGLTCLFKSSPTLNTLILKIIHEYRIERKEWNRDLWDVTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMVLHTGNCNARDTLRRQKIRSQMRGFSWASSNAKVAFQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01535 510 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Viun11g01535 510 Gene3D - 22 72 - -
Viun11g01535 510 Pfam F-box domain 26 62 IPR001810 GO:0005515
Viun11g01535 510 Gene3D Ribonuclease Inhibitor 122 481 IPR032675 -
Viun11g01535 510 SMART 9598neu4hmm 436 510 IPR006566 -
Viun11g01535 510 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 24 485 - -
Viun11g01535 510 Pfam FBD 436 475 IPR006566 -
Viun11g01535 510 SUPERFAMILY F-box domain 23 69 IPR036047 GO:0005515
Viun11g01535 510 SUPERFAMILY RNI-like 123 420 - -
Viun11g01535 510 CDD F-box_AtFBL13-like 26 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01535 Viun-Chr11 31583317 31585508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01535 21 459 EF-hand Containing Proteins AT5G41840 23.395 5.15e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01535 - - gmx:100819136 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01535 11 31583317 31585508 Viun11g01535 11 31583317 31585508 ECH