Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01533 ATGGCTGGAATCGGCTTCGAGGATCTGCTTCCTGTGATGGCCACCAAGCTTGGTGGGGAGGGCCTTATGAAGGAGCTCTGCAACGGGTTTGAGCTTCTGGTGGACAAAGAAAAAGGGGTGATCACGTTGGAGAGTTTGAGGGAAAAAGCTGCACTTTTGGGGTTGCAGGACTTGAAGGAAGATGAACTTGTGAGCATGATGAGGGAAGGGGATCTTGATGGAGATGGGGCACTCACTCAGATGGAGTTTTGCGTTTTGATGTTCAGGTTGAGCCCTGAGTTGATGGAGGAATCCTGGTTTTGGCTTGAAGACGCTCTCCAACATGAACAACTCAACCAAACCACCAATAACAACTCTTCCATTTAG 366 0.4918 MAGIGFEDLLPVMATKLGGEGLMKELCNGFELLVDKEKGVITLESLREKAALLGLQDLKEDELVSMMREGDLDGDGALTQMEFCVLMFRLSPELMEESWFWLEDALQHEQLNQTTNNNSSI 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01533 121 PANTHER CALCIUM-BINDING PROTEIN KIC 5 111 IPR044205 GO:0005509
Viun11g01533 121 Gene3D - 4 119 - -
Viun11g01533 121 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Viun11g01533 121 SUPERFAMILY EF-hand 23 102 IPR011992 -
Viun11g01533 121 Pfam EF-hand domain pair 37 89 IPR002048 GO:0005509
Viun11g01533 121 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Viun11g01533 121 SMART efh_1 62 90 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01533 Viun-Chr11 31544054 31544959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01533 6 109 EF-hand Containing Proteins AT4G27280 62.857 2.76e-41 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01533 K24345 - gmx:100527206 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01533 11 31544054 31544959 Viun11g01533 11 31544054 31544959 ECH