Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01526 ATGTTTAGATTTTCTTGTTTCCATGCTAATGTACACGGCAATAAAACAAAGAAAACAGTTCAACCTTCTACTGAAGTAATGTTGAAGACTTATCAAGATGTTGCCCAAAGTCAACGCCGTAAAGATTCATCTAATTCTCCAAGCGCATATTCACCCCTTTTGAAAGAACAAGTTGACCAGAAAATAGATGTGACTGGGAGTCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCAGAGGATATGAGTAGCAAGTTTTCCTTTGAAAATGACAGTCAAGTTAACCAAACTAGGCCTCTTATGAAGAAGAGTCAGTCTCTTCAAAGTGTGCTTGATCAAGGCATAAGGGATGGTGATGAAGATCTGGGGCTGTCGTGTGATGATGGCAAAAGCCCAATGGAGTCAACGATGTCAACTTCCAAAAAGTATCATAATGGAAACCCTATTGATCAGTGTGGAAGTAACCCAAACGTTGCCAGTTCAGGTTTTGCAAATGATGCCTCGCTTTTTTCAATTGGAGACCCAACACCTTCAGATAAAGATGCCCGTGAAATTTCTGACACTCCTTTATCTTGTGAGTATGTTGGTGACATTCCTGACCAAACTTCTGTTCCTGGTAGCGTATCACTAAGGAAGTCGCATTCTTCACCCAATATCAGAGCTTCTATACTTTCTGCTGAAAAAGATGCTTTTAGACGTGCATTGTCAAGATCCTGTGATGATCTTCATGCTTTAAGCATGAGGCAGAAAGAGGAATTCATCAACGACTTTGATGATCAAATAAGGGGAGATCAAGAAAGAGAGAATGACATGGGAAAAACTGAAGATGGTCATATGGACAACCTCTTTGATGATGGTTTCGATTCTTATCTGATTACTGGTTCAGCAAAAGACTGGGTAATGCCATTGACATATGATACAATTGATTCCAAAACCCTTCAAGGAGATTCCTCGGTTGAATTTCCTAACAAGGATTTCAAGATTAAGCGCATTGAAGATTGGGTTATTGGTCTGCAGCATTGTGGACCACCTGGAGAGGAAACAAATGAAGAATTGCCTGAAGTTGTTGAGCCTTTAGATGATGTTAACGCAGTAAATGGTGTGACTGCTGCCATTGTAGATCACAAGGCCTCTCCAGGAATGGATGCTGCTAAAAGATATATATCTTCTCTGGGTCCTAATGCCACTACTGCTCAACTGGCTAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAAGTGCTCAATTTGTCTGGAAATGCCATCGTGAGGATAACTGCGGGTGCTCTTCCCCGTGGACTTCACGCACTGAATTTGTCCAGAAACAAGATCTCCACTATTGAAGGATTACGCGAACTTACAAGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGTCCATCTCTGAAAGAGCTCTACCTGGCTGGAAACAAGATCAGCGAAGTGGAGGGTCTGCACCGTCTCTTGAAACTAAGCATCCTGGATCTCCGTTTCAACAAGATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATTCTTTGCAAGCTATCAACTTGGATGGGAACCCTGCCCAGAAAAACGTTGGAGATGAACAGATGAAGAAGTATCTGCAGGGCCTTCTACCCCATCTCGTCTACTACAATCGGCAGCCTATCAAAGTGAGCACTTTGAAGGATGGAGCAGAACGGTCGGTTCGGCTAGGAATGAATTCCCATCAGTTTGATCGCGGCCTTAGGTCGGATCGCAAGACCACAAGGAAAACCAGCCAAGGTGGTGTTGGCTCACGGAGATCAGTGGCCACTTCCACTCATGTTCGCAGAACTGTGGATTCACCAAAAGTATCCAGAGGCAAGCAAGCTCACCTGCCACCATCTAGAACCAAAGCACCAACACCAACCCACACTCGCCAGCATTTTGAAGCTCCCACCAAAGTATCGAACGCGACCCCAGAGCTCTCCATGCGCAAGAGTCGTAGCGAGGGGAATTTTGGAGCTCTGTGA 2061 0.441 MFRFSCFHANVHGNKTKKTVQPSTEVMLKTYQDVAQSQRRKDSSNSPSAYSPLLKEQVDQKIDVTGSHISNWDSVERSCRSEDMSSKFSFENDSQVNQTRPLMKKSQSLQSVLDQGIRDGDEDLGLSCDDGKSPMESTMSTSKKYHNGNPIDQCGSNPNVASSGFANDASLFSIGDPTPSDKDAREISDTPLSCEYVGDIPDQTSVPGSVSLRKSHSSPNIRASILSAEKDAFRRALSRSCDDLHALSMRQKEEFINDFDDQIRGDQERENDMGKTEDGHMDNLFDDGFDSYLITGSAKDWVMPLTYDTIDSKTLQGDSSVEFPNKDFKIKRIEDWVIGLQHCGPPGEETNEELPEVVEPLDDVNAVNGVTAAIVDHKASPGMDAAKRYISSLGPNATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCPSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPIKVSTLKDGAERSVRLGMNSHQFDRGLRSDRKTTRKTSQGGVGSRRSVATSTHVRRTVDSPKVSRGKQAHLPPSRTKAPTPTHTRQHFEAPTKVSNATPELSMRKSRSEGNFGAL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01526 686 SMART LRR_sd22_2 505 529 - -
Viun11g01526 686 SMART LRR_sd22_2 438 459 - -
Viun11g01526 686 SMART LRR_sd22_2 483 504 - -
Viun11g01526 686 SMART LRR_sd22_2 460 482 - -
Viun11g01526 686 PANTHER NISCHARIN RELATED 230 648 - -
Viun11g01526 686 MobiDBLite consensus disorder prediction 646 676 - -
Viun11g01526 686 MobiDBLite consensus disorder prediction 194 216 - -
Viun11g01526 686 MobiDBLite consensus disorder prediction 607 628 - -
Viun11g01526 686 Gene3D Ribonuclease Inhibitor 370 556 IPR032675 -
Viun11g01526 686 MobiDBLite consensus disorder prediction 122 142 - -
Viun11g01526 686 ProSiteProfiles Leucine-rich repeat profile. 485 506 IPR001611 GO:0005515
Viun11g01526 686 SMART LRR_typ_2 416 439 IPR003591 -
Viun11g01526 686 SMART LRR_typ_2 460 483 IPR003591 -
Viun11g01526 686 SMART LRR_typ_2 505 527 IPR003591 -
Viun11g01526 686 ProSiteProfiles Leucine-rich repeat profile. 462 484 IPR001611 GO:0005515
Viun11g01526 686 SMART LRR_RI_2 416 443 - -
Viun11g01526 686 SMART LRR_RI_2 460 482 - -
Viun11g01526 686 SMART LRR_RI_2 483 512 - -
Viun11g01526 686 SUPERFAMILY Outer arm dynein light chain 1 405 573 - -
Viun11g01526 686 MobiDBLite consensus disorder prediction 587 686 - -
Viun11g01526 686 ProSiteProfiles Leucine-rich repeat profile. 440 461 IPR001611 GO:0005515
Viun11g01526 686 FunFam Protein phosphatase 1 regulatory subunit pprA 377 558 - -
Viun11g01526 686 Pfam Leucine-rich repeat 421 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01526 Viun-Chr11 31488418 31492519 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01526 - - gmx:100790061 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01526 11 31488418 31492519 Viun11g01526 11 31488418 31492519 ECH