Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01480 ATGGCCTCCCAACACGAAAACGGGTTGAATGTGGACCCGATTCCTATTGAGGTCGACACAACAATGGCTTTGCAACAGGAGAATCGGTTGGATATCGACCCGAATCCAGTTGGGGTGGAGACTCAAGAAGCGCAGACAGAAAAGTTTGCGACTTTGGGTTGTGTTGCTCCTATTGAGGAAGGTGTGGAGAAGATCAATTTGTTGGGTTCCTCTCTTTGTTTTCCGATTGAGGAGAACGGTGATAAGGATGACAGCGGAAGTGATAGTGATAGTGAAAGCGGAAGTGAGAGCGAAAGCAGAAGTGAAAATTCAGGGTCTGAAAGTTCTGATTCTGGTAGTGAAATCAGTAGTAGTAACGGTAGTAGCAGTAGTGATAGCGAAGAGGAGAGTGATGATGACGACGAAGACGACAACGAGGTAGAAGTTGAAGAAGGCGAGATTAGTTCTGATGAAGAAAAGGTGGCTAGTTGGAGCATGGTTGATGATGATGCTCATGATGATGAAGATGGTGATGCTGGAGTTGGACCCATCAGGTCAAAGAACGAGCTTCAGAATCTGCCCCTTGTTCCTCCTGTCAATGCTGCTTTGGAACCACACCATCAAATGTTGCCAGTGGGAATCATTACTTCTATTCTTGGTGCTCAAGTCATTGTTGAAGGAGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGTCGGAAGCCACTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAGAACCCTTTTTATATTGTGAGATACAATTCTGCAAGTGAAGTTCCTGAAGGAATCAATGGGGGAACCTTTATCTCGTTTGTTCCAGAATTTGCTGAGCATGTGATTAATAACAAAGATCTTTATAGGAAAGGGTACGATGCATCTGGTGCGAATGATGAAGAGTTATCTGATGAAATGGAGTTCTCAGATGATGAGAAAGAGGCCGAATACAGGAGAATGCAAAGAGCTACAAAAAGAGGTGTAAATGATCAAAATCATGGCAAGAAGAAAAACAGAAAGAAATTTTCACCTAAAGAGCCTGCGGCACAATCCATGCCTGCTGCACCTGCTGCACCAATGGTTACTCAGGGAAATTGTCCTCCTTTTCAAGGCATTGGACAAACACTGTTGGGTGGAACTGCCACAGTTCCATCATTTCCCCACTTAAACGCCGCACCCCCTAACTTTGGTACTCATGGAATTTGGACAAACGGAACATTTCCACAGCAGCCACAGAATGCTATGCTTCATAATGGTTTTCCTGCAAATGGGGTATCATGGTTCCCACAAAACACTCAAATTCCTCCTCAGATGCCAATGCCAGGAATTCCATTTCAACAGCAAGTACATGGCAATCAGGGATCTCTTACAACAACTATGCTACCTGGAATGCAACAAAATATGTTTGCTCAATCCATGTATGCAGCAGGGCTTCTTGGTCAAAACCAAATGGCATTTGGGATGGGATCACCTTTCCCACAGCTTCAGCCACCTGCACAACAGGGATTTCCATCCTCTTCTGCTGCCCCCCCTCAGTTTCATCCACGTCCATCTGGTAATCGTGGTGGTAGAAAAACATTTCATGGTGCAGGAAGGAAAGGGTGGCGACCAGCCAAGTGA 1638 0.4493 MASQHENGLNVDPIPIEVDTTMALQQENRLDIDPNPVGVETQEAQTEKFATLGCVAPIEEGVEKINLLGSSLCFPIEENGDKDDSGSDSDSESGSESESRSENSGSESSDSGSEISSSNGSSSSDSEEESDDDDEDDNEVEVEEGEISSDEEKVASWSMVDDDAHDDEDGDAGVGPIRSKNELQNLPLVPPVNAALEPHHQMLPVGIITSILGAQVIVEGVEKHDPLNEGSILWLTESRKPLGLIDEIFGPVKNPFYIVRYNSASEVPEGINGGTFISFVPEFAEHVINNKDLYRKGYDASGANDEELSDEMEFSDDEKEAEYRRMQRATKRGVNDQNHGKKKNRKKFSPKEPAAQSMPAAPAAPMVTQGNCPPFQGIGQTLLGGTATVPSFPHLNAAPPNFGTHGIWTNGTFPQQPQNAMLHNGFPANGVSWFPQNTQIPPQMPMPGIPFQQQVHGNQGSLTTTMLPGMQQNMFAQSMYAAGLLGQNQMAFGMGSPFPQLQPPAQQGFPSSSAAPPQFHPRPSGNRGGRKTFHGAGRKGWRPAK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01480 545 MobiDBLite consensus disorder prediction 500 514 - -
Viun11g01480 545 MobiDBLite consensus disorder prediction 125 148 - -
Viun11g01480 545 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 27 510 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Viun11g01480 545 MobiDBLite consensus disorder prediction 495 545 - -
Viun11g01480 545 SUPERFAMILY Translation proteins 202 265 IPR009000 -
Viun11g01480 545 MobiDBLite consensus disorder prediction 77 155 - -
Viun11g01480 545 MobiDBLite consensus disorder prediction 98 124 - -
Viun11g01480 545 MobiDBLite consensus disorder prediction 301 367 - -
Viun11g01480 545 Gene3D Probable tRNA pseudouridine synthase domain 174 279 IPR038664 -
Viun11g01480 545 Pfam Gar1/Naf1 RNA binding region 204 285 IPR007504 GO:0001522|GO:0042254
Viun11g01480 545 MobiDBLite consensus disorder prediction 77 97 - -
Viun11g01480 545 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 174 280 - -
Viun11g01480 545 MobiDBLite consensus disorder prediction 318 337 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01480 K14763 - gmx:102661630 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01480 11 30992789 30995577 Viun11g01480 11 30992789 30995577 ECH