Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01400 ATGTTGCAGAAGGAGTGCAAGAGATACAGAATCATGGTGGGTGGAAATGGTTTGTTTTACCCTGTTGTGGGGTTTGCATCGATCGTGTTGTTTATATACATGTCTTTTGGGGATGTTAAGTTTGGCTTTGAGGAGGAAGTGGAATTGGCTTTTGTGGAGAGAAATGGAACTCAGTTTATGGTGGATGGGAAGGCTTTCTATATTAATGGATGGAACTCTTACTGGTTAATGGTGCAATCTGTAGATGAGTATTCCAGGCCAAGGGTGCGTGAAATGCTGAAGGCTGGGGCCAAGATGGGGCTTACTGTGTGTAGAACTTGGGCCTTCAATGATGGTGATTACAATGCTCTTCAGAGTTCTCCTGGTGTGTTCAATGAACAAGCTTTCAAGGCCTTGGACTATGTCATAGCAGAAGCAAGGAAACATGGAATTAGGTTACTCCTTAGCTTAGTAAATAACTTGCATGCATATGGTGGGAAGACTCAATATGTTAAATGGGCATGGCAAGAAGGGGTAGGGCTAAGCTCATCTAACGATTCTTTCTTCTTTGATCCATCAATCCGCAGTTATTTCAAGAATTATATCAAGACAATTCTGACAAGGAAGAATACTATAACTGGAATTGAATATAGAAATGACCCTGCCATTTTTGGTTGGGAATTGATTAATGAACCTCGGTGCATGACTGATCCTTCTGGTGACACTCTCCAAGATTGGATAGAAGAAATGTCAGCTTTTGTCAAACTCATCGACAAGCGCCATCTGGTGACGGTCGGACTCGAAGGTTTTTACGGTCCTAATGACCCGAAAAGATTGACGGTGAACCCTGAGGACTGGGCATCTCGACTTGGATCTGATTTTATAAGGAACTCCTTGATCTCAAACATTGATTTCACCTCTGTTCATATCTATCCTGATCACTGGTTTCATGAGCAGGTATTTGAAGACTACATGAAATTTGTGTCCAAGTGGATGCTTTCTCACATTGAAGATGGTGATAAGGTACTTCACAAGCCAGTTGTGTTCTCTGAATTTGGATTGTCAGACATAAATTTTACAATGTCGGAGAGAAAAACAATGTACAGAACAATTTTAGACATATCCTACAAATCTGCAAAGAAAAACAGGTCTGGAGGTGGTGCTCTAGTTTGGCAATTCTTGGTTGGAGGAATGCAGGAGTTTAGTGATGATTTTGGAATCATTCCATGGGAAAAGACACCAATTCCTTCACTGTTTATTGAACAATCATGCAGATTGGCGAAGGTGAAAGGGTGGCCTCATAAGGATCAAAGTTTCAAACAATTTTGTTAG 1311 0.4111 MLQKECKRYRIMVGGNGLFYPVVGFASIVLFIYMSFGDVKFGFEEEVELAFVERNGTQFMVDGKAFYINGWNSYWLMVQSVDEYSRPRVREMLKAGAKMGLTVCRTWAFNDGDYNALQSSPGVFNEQAFKALDYVIAEARKHGIRLLLSLVNNLHAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIRSYFKNYIKTILTRKNTITGIEYRNDPAIFGWELINEPRCMTDPSGDTLQDWIEEMSAFVKLIDKRHLVTVGLEGFYGPNDPKRLTVNPEDWASRLGSDFIRNSLISNIDFTSVHIYPDHWFHEQVFEDYMKFVSKWMLSHIEDGDKVLHKPVVFSEFGLSDINFTMSERKTMYRTILDISYKSAKKNRSGGGALVWQFLVGGMQEFSDDFGIIPWEKTPIPSLFIEQSCRLAKVKGWPHKDQSFKQFC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01400 436 SUPERFAMILY (Trans)glycosidases 51 413 IPR017853 -
Viun11g01400 436 Pfam Cellulase (glycosyl hydrolase family 5) 84 363 IPR001547 GO:0004553|GO:0071704
Viun11g01400 436 Gene3D Glycosidases 48 423 - -
Viun11g01400 436 FunFam Mannan endo-1,4-beta-mannosidase 6 48 423 - -
Viun11g01400 436 PANTHER - 20 431 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01400 Viun-Chr11 30101041 30105026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01400 15 436 Glycoside Hydrolase AT2G20680 70.519 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01400 K19355 - gmx:100811461 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01400 11 30101041 30105026 Viun11g01400 11 30101041 30105026 ECH