Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01058 ATGGATGCCAGACCTGTGTCATGGTTAATTAAAGTGTGTGCAGCTAAACTAGGAACAACAAAAACAGTTAATGTGTTTGGTCACTTGGGTCGAAAAACAGGCGTAAAGGAGTACAATGCATTGCTAAAAGTGTGCATAGAGAAGGCTAGGGCGACTGATGATGAACACATAGCTGTAAATGAAATGAGTAAGGCTTTTCACCTTCTCAAATCAATGAGGGATTCTGGATATCCGCTGGAAGAGCAAACATATGGTCAACTTCTCTGGTATATATCTGATATGGGTCTGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCTGAGAATCCTGGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTAAGAGTTGACAATGAAGAAATGATCCGGGACATTTGCGAGTTTATTACTGTTGATGATAGAGAAAACACTTCTGCCTTACGAGTAAGTTACTTGATGGCTCTTTGTGAAAGTGATCGAAAGAAGCAAGTTTTGGATGTGGTGAAGAATGTAGACATCAAGCTTTTATCTGCAGAATGTATTGTAAATATATTCCAATCATTAGGCAGGCTCCAACAGGAATCTGTTGCGGATGACATACTTTTGGATTTGAGAGCACGTGATTATGATGAAGATAAAATTTCAAACTTCATTGTTAGTTATGCTCTTAGCATTCCAAATTTAGCGGTCGAGGACATCATTGCAAAAGTCAATAATATGCATGAATTACTGGAACTCTTGCCTTCGTCGTCATCATATGAAAAGCTCATTTTACATTGCTGTGGTTTAGACAAGGTGGGCGATGCTCTAGATATTGTTGAACAAATGTGTGATGCTGGCTTTAACTTGTCAACTGGCGTGTTACAATTCATATTACAAATCTGCGAGGAATCTTTTGAATATATTTTGGTACATCGAATCCATTCAATAATATGTCGCTATCATTTGGCGTTGAATGGTGAAATATGCAGGTGCTTGGTACACTTTTGTGTGAGGATCAAAGATTTTGAAGGAGCTTACAAAATAATTGGTGACTTAGAGGAAATGAATGTTAAACTTAAGACAAACATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAGAACATCAGTGCTGGGTTAAGGGTCGTGAAACACATGCAAGATGCCAATGTACCGCCTAATTCTCAGACTTTCTGCTATTTGATACACAATTGTGAAACGGAAGAGGATATAATGAAGTATTGTGATGAAATGAAGCAATCTGGAATTCAACCGACAAAGCAAGTTTTTATGGCCCTTGTTAATTCATATGCAGCTTGTGGAAAATTGGAGAAGGCAAAACAGGTACTTTTGGATCCAAACATACCAGACAAGAACATAAATGAAATCAAGAGTGTACTTGTCGCAGCTCTTGCATCACATGGGCAATTATCCGAGGCTCTTCTTGTCTATGAACAGATTAAGAAAGCTGGACATAAGTTGGAGCCAAAAGCAGCTACCAGTCTGATTGAAGAGTTGACTCAACACAATGGGGAGTTGGATAGATTGTTACTTCTACTCAAGGAAGTGAGTGATCTTGACTATTGGGTTGATGGCTGCTTCAAAGTCATCGTGTACTGTGCACGGAACAAGAATTTGAGTTCTACTATTCTTTTGTTCAAACAACTCAAGGATACGTTTAGAAATGATGAAATGGTAATGGAAGCCCTTTTTGACGGAGTATTTTCTGCAATTGCAGAATCAGAGTCCACTCATTTACAGATTGGCCTAGACTTGCTTTGGGCAATCAAAGATGAACTTGGCCTTTGGCCGTCACGGCAATGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAACAATGCTCGCCTGATTTGGAGAGAGTACGAGATTGCTGGGTTTCCTTACAATGTATTAAGTTACTTGCGAATGTATCAAGCACTTTTGGCAGCTGGAGATGTTAGATCTGCATCCTTCATGCTTAAGAAAATTCCACGAGACGATGCTGAGGTTTGTTCTGTCATCATAGCATGTCAGGAAACATATTGTGCTCTTGATTCTCTAGGAGAGAAGAAAAAGCAAGGAGAAAGTAAGGGAAAAAAGAGCAAAAAAAAGAGCAAGACCTGA 2139 0.3904 MDARPVSWLIKVCAAKLGTTKTVNVFGHLGRKTGVKEYNALLKVCIEKARATDDEHIAVNEMSKAFHLLKSMRDSGYPLEEQTYGQLLWYISDMGLVQEFQLFSDVIKAENPGSASRLGYYEMLLWLRVDNEEMIRDICEFITVDDRENTSALRVSYLMALCESDRKKQVLDVVKNVDIKLLSAECIVNIFQSLGRLQQESVADDILLDLRARDYDEDKISNFIVSYALSIPNLAVEDIIAKVNNMHELLELLPSSSSYEKLILHCCGLDKVGDALDIVEQMCDAGFNLSTGVLQFILQICEESFEYILVHRIHSIICRYHLALNGEICRCLVHFCVRIKDFEGAYKIIGDLEEMNVKLKTNMYNAIMAGYFREKNISAGLRVVKHMQDANVPPNSQTFCYLIHNCETEEDIMKYCDEMKQSGIQPTKQVFMALVNSYAACGKLEKAKQVLLDPNIPDKNINEIKSVLVAALASHGQLSEALLVYEQIKKAGHKLEPKAATSLIEELTQHNGELDRLLLLLKEVSDLDYWVDGCFKVIVYCARNKNLSSTILLFKQLKDTFRNDEMVMEALFDGVFSAIAESESTHLQIGLDLLWAIKDELGLWPSRQCLDFLLSACANAGDLNNARLIWREYEIAGFPYNVLSYLRMYQALLAAGDVRSASFMLKKIPRDDAEVCSVIIACQETYCALDSLGEKKKQGESKGKKSKKKSKT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01058 712 Pfam PPR repeat 467 492 IPR002885 -
Viun11g01058 712 Pfam PPR repeat 431 451 IPR002885 -
Viun11g01058 712 NCBIfam pentatricopeptide repeat 363 395 IPR002885 -
Viun11g01058 712 PANTHER OS02G0132600 PROTEIN 7 701 - -
Viun11g01058 712 Gene3D Tetratricopeptide repeat domain 535 712 IPR011990 GO:0005515
Viun11g01058 712 Gene3D Tetratricopeptide repeat domain 309 410 IPR011990 GO:0005515
Viun11g01058 712 Gene3D Tetratricopeptide repeat domain 411 533 IPR011990 GO:0005515
Viun11g01058 712 Gene3D Tetratricopeptide repeat domain 6 308 IPR011990 GO:0005515
Viun11g01058 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Viun11g01058 712 Pfam PPR repeat family 361 406 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01058 Viun-Chr11 22929176 22952587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01058 213 653 Glycosyltransferase AT1G05670 20.755 6.02e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01058 - - gmx:100787964 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01058 11 22929176 22952587 Viun11g01058 11 22929176 22952587 ECH