Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02790 ATGACTGTGAAAGATTTTCCTGAAGAATGTTGGGAATCAGTGTTCAGATTCCTTGGCCTTGGTCATCACCATTTGGAGTCTCTATCTCTTGTTTGCAAACAGTTTCTTGCCATCACAAATAGGCTTAAATTCTCTCTCACAGTGTATGATCCAACAATTCCACTCTTTCCTCGGTTGTTCCTGAGATTTCCAAGGCTCAAAATCTTAGACCTGAGTCTCCTGAATGGCCACCATGAACACTTGCTTCATCAAATTTCACAATCTGGGTTGGACCTTGATTTGATCAATCTATCCAACCAGAGAACACTTTCTGTTGATGGCTTGCGAGAACTTGGCTCAAACATGAGAAATTTGAGGGCTCTGATCTGTTCAAACATTGGCTCTCTTCGTGATAGTCATCTGGTAATCATAGCTTATTGTTTCCCATTGCTTGAAGAGCTTGACATAAGCTTCCCACTGAATTCTCAAACATCGGATTTTGGAGTTCTAAGGTTGTCTTCTATGCTTGAGAATCTTCGCAAGATTAACATCTCTGGTAATCACTTGATCACTGATAAATCACTGTTCTCTCTCTGCCAAAACTGTTTGTCATTGGAAGAGATTTCATTCTTCATCTGTTTTAAGATCACTCAAACAGGCATTGCCTCTGCGATCCGCCTCAGACCCGGTTTGAGATCCATTTCATTTAACATCGAAAAGAAAAGAATACATGGACCTGGTTTAACACTCACCCCCATTGACTTGAATTTGATTGATTCATTCAAGAGTCTGAAAGGGTTAACTGCTATAGATTTGTCTAATTCTGTTATCTCAGATGAGTTTCTCTTTGCGCTTGCAGAAGGTGGAGGGCTTCTGCTAAAGCAGATTACCCTCCAAGATTGTTGCAATTGTACATTCTCAGGAATCTCTTATGTGTTATCCAAATGCCAATCTGTGCAATGCTTGGATCTTCGGAAAGTTGATTTTTTAACTGATGAATGTATCAGCAAGTTATCTGTGTTTCTTCTTAGCCTAACCACTATAAACCTAAGTGGTTGCTGCCAGCTGACAAATTCAACATTTTTCATTCTCACAAGAAACTGTCCTTTGCTCAGTGAGATCAAAATGGAAAGAACCTATCTTGGGGTGGAAGGAGAAGAAGATTCAATGAGGGATTTTGCTGTGAACCTTGAAGTGAAAAAGGTGTTTTTGGGTGATAATGTTTTGCTGAGTGATGCAAGTTTGCTTAAATTTGTTTCCATTTGCCCCAGTTTGCAGATTCTTGACTTAATCGGTTGTGAGGGTGTTTCTGGTGAAGGTGTTGTTGAGGTTTTGAAGAGATGCATTGAGATAAGGCATTTGAATCTGGCTAATACAGGAATGAAAGTGTTTGATATAGACTTTGAAGTTTCCAAGCTGAAGGTGTTGAACTTGTCAGGGTCAAGAATTGAGGATGAAACTCTCTCAGTAATTTCAAGAAGGTGTTGTGGACTAATGCTTCTGGACATTCAGAGTTGCTGGTTTGTGACAGAAAAGGGTGTTAGAGAAGTGGTAGAAAACTGCAAGACATTGAAGGAGTTGAATCTGAAGAATTGTAGGTTGGTGAGTGATGATTTTGTTGATTGGTTGGAGTTTTCAAAACCATCATTGAGAATAATAGTTACACCTACTGATGTTGGTGCTTATTACTGA 1671 0.395 MTVKDFPEECWESVFRFLGLGHHHLESLSLVCKQFLAITNRLKFSLTVYDPTIPLFPRLFLRFPRLKILDLSLLNGHHEHLLHQISQSGLDLDLINLSNQRTLSVDGLRELGSNMRNLRALICSNIGSLRDSHLVIIAYCFPLLEELDISFPLNSQTSDFGVLRLSSMLENLRKINISGNHLITDKSLFSLCQNCLSLEEISFFICFKITQTGIASAIRLRPGLRSISFNIEKKRIHGPGLTLTPIDLNLIDSFKSLKGLTAIDLSNSVISDEFLFALAEGGGLLLKQITLQDCCNCTFSGISYVLSKCQSVQCLDLRKVDFLTDECISKLSVFLLSLTTINLSGCCQLTNSTFFILTRNCPLLSEIKMERTYLGVEGEEDSMRDFAVNLEVKKVFLGDNVLLSDASLLKFVSICPSLQILDLIGCEGVSGEGVVEVLKRCIEIRHLNLANTGMKVFDIDFEVSKLKVLNLSGSRIEDETLSVISRRCCGLMLLDIQSCWFVTEKGVREVVENCKTLKELNLKNCRLVSDDFVDWLEFSKPSLRIIVTPTDVGAYY 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02790 556 FunFam F-box/LRR-repeat protein 4 240 375 - -
Viun10g02790 556 SUPERFAMILY RNI-like 53 297 - -
Viun10g02790 556 FunFam F-box/LRR-repeat protein 20 461 548 - -
Viun10g02790 556 SUPERFAMILY RNI-like 290 546 - -
Viun10g02790 556 SUPERFAMILY F-box domain 4 44 IPR036047 GO:0005515
Viun10g02790 556 Gene3D Ribonuclease Inhibitor 457 548 IPR032675 -
Viun10g02790 556 Gene3D Ribonuclease Inhibitor 381 456 IPR032675 -
Viun10g02790 556 SMART LRR_CC_2 89 114 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 257 281 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 415 440 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 488 513 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 514 549 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 463 487 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 335 360 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 195 220 IPR006553 -
Viun10g02790 556 SMART LRR_CC_2 169 194 IPR006553 -
Viun10g02790 556 Gene3D Ribonuclease Inhibitor 1 236 IPR032675 -
Viun10g02790 556 Gene3D Ribonuclease Inhibitor 237 376 IPR032675 -
Viun10g02790 556 Pfam Leucine Rich repeat 171 192 IPR001611 GO:0005515
Viun10g02790 556 PANTHER UNCHARACTERIZED 290 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02790 Viun-Chr10 40789394 40791709 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02790 K10268 - gmx:100811565 884.404