Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02787 ATGGCCCTTCTCCGTCTGAATCGTCGAAGCACAACCAGCTCTCGCATCCTCTGTTTCTCTACTTCGAATTCCGATTCTAACTCCAACTCCAACTCCAACTCTCCCTTCACTCCCCTTTTCAGAGACATCAAGGACAGTCTCAAGCAACCCTCTTCCTCTTTCTCAAACCCTCGCTCCCAACAACCCTCCACAGACAAGATCCTAAAAAATCTCAGCGAGTTCCGCGCCAAGACCTCTCCACCTCCGCCCGGCGACCCGTCGCAGCAGCAGAACCAATTCTCGTTCCAGGAAATCTACCAGCGCCGCAACATGCAGGGGAGTCCCTCCAGATCGGGACAATCGCCCCTCCTCAACATGGATTCCATTCGCGAGAGCTTGCGGAAGGTTAGTGGTGCCCAAACCTCGCAGCGGCAGGGTAATCTTGGGGTGATCGGCGGCACGAGCGCCTTGCCGCAGGCCATTTTCGGGAAAGAGATGAGGAAAGAGGGTACGGAGTCGACGGCGATGTTTTCGGCGGGGTTCTTGAAGACTTACAGCGTGGAGGATTTGGGGAGGAAATTGAGGACGCTGAGGCCGGAGGGAAAGGAAAAGGATTGGTTTTCAGTGAGGGAGTTGAGTGAGAGGTTGACGAGGTTGAGGAAGATGGAGGAGGAGCAAGCCCGTTCCAATCCCCGTGATGCTGCTCTTAACGTAATAAGAGGATGTCTCGTTGAGATGAATGATGAGCGTACTCTTGCCGCGAAGAAAGCTTCAATGCAGGGATTTAGCATATTGGGCCATTTGAGTGGGACTTCAACCTACTCTCTGGAACCTCCTAAACCCGATCTTGTTGAAAAGTACTTTCATCCGGATAACATGTCCTCTGCTGAGAAGATGAAAATTGAGCTTACCAAGGTTAGGGATGAGTTTAAAATGTCGGAGTCGGACTGCGGTTCTGCGCGTGTTCAAATTGCACAACTCACAACTAAGATTAAGCATCTATCAGCAGTTCTACACAAGAAGGATGTTCATTCTCGTAAAGGTTTGGTAGCAATGGTTCAGAGGAGAAAAAGATTACTGAAATACCTCAGAAGAACTGATTGGGATTCCTATTGCTTTGTTATCTCCAAGCTGGGTCTACGTGATAATCCTGAACATAGCTATAGATCTCGAACTAGTATGGCAACTTAG 1170 0.4983 MALLRLNRRSTTSSRILCFSTSNSDSNSNSNSNSPFTPLFRDIKDSLKQPSSSFSNPRSQQPSTDKILKNLSEFRAKTSPPPPGDPSQQQNQFSFQEIYQRRNMQGSPSRSGQSPLLNMDSIRESLRKVSGAQTSQRQGNLGVIGGTSALPQAIFGKEMRKEGTESTAMFSAGFLKTYSVEDLGRKLRTLRPEGKEKDWFSVRELSERLTRLRKMEEEQARSNPRDAALNVIRGCLVEMNDERTLAAKKASMQGFSILGHLSGTSTYSLEPPKPDLVEKYFHPDNMSSAEKMKIELTKVRDEFKMSESDCGSARVQIAQLTTKIKHLSAVLHKKDVHSRKGLVAMVQRRKRLLKYLRRTDWDSYCFVISKLGLRDNPEHSYRSRTSMAT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02787 389 Gene3D - 341 376 - -
Viun10g02787 389 MobiDBLite consensus disorder prediction 18 40 - -
Viun10g02787 389 SUPERFAMILY S15/NS1 RNA-binding domain 295 375 IPR009068 -
Viun10g02787 389 Pfam Ribosomal protein S15 298 374 IPR000589 GO:0003735|GO:0005840|GO:0006412
Viun10g02787 389 Gene3D - 290 339 - -
Viun10g02787 389 MobiDBLite consensus disorder prediction 18 39 - -
Viun10g02787 389 SMART Ribosomal_S15_2 296 374 IPR000589 GO:0003735|GO:0005840|GO:0006412
Viun10g02787 389 Hamap 30S ribosomal protein S15 [rpsO]. 286 375 IPR005290 GO:0003735|GO:0005840|GO:0006412
Viun10g02787 389 MobiDBLite consensus disorder prediction 127 145 - -
Viun10g02787 389 PANTHER S15/NS1, RNA-BINDING PROTEIN 2 380 - -
Viun10g02787 389 MobiDBLite consensus disorder prediction 127 146 - -
Viun10g02787 389 NCBIfam 30S ribosomal protein S15 296 374 IPR005290 GO:0003735|GO:0005840|GO:0006412
Viun10g02787 389 CDD Ribosomal_S15p_S13e 295 372 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02787 - - ccaj:109818150 431.795