Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02772 ATGGGGGGAGCTTGTTCTAGGAAGCGAGAGCAGGACAATGAAGATAGTATTATCAGAGGTCTATCACGAAGATATTCTAAATGTGGGAGTTTGAAATGGTGGACATCCTCTTTTTCTTATCCATCTATTGATTTTCAGTTACGGAAAGGAGAATGTCCACCATTGTTGGACCTGTGTATACAGAAAATAAATGAGGACATTGATAAATATAACTCATTTTCTATGCTGCCACGGGATATAAGTCAGTTAATTTTTAATAATTTGGTTTACTCCAGACGTCTAACCAGTGTTTCCTTAGAAGCTTTTCGAGATTGTGCTCTACAGGATCTTTACTTAGGAGAATATGATGGTGTTGATGATAATTGGATGGATGTAATCTCATCCCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACATACCTTAAAGATTGTGAAAGTATAATTTCTTTAAATCTAAATTATTGTGATCAAATTTCAGATCGTGGACTAGAGTGCATTAGTGGCCTGTCAAATTTGACAAGTTTGAGTTTTAGACGAAATGATTCAGTTTCTGCTAAGGGAATGAGTGCCTTTTCTGGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGCCCCGGGATTCATGGAGGCCTCGTTCATCTTCGAGGTTTGACCAAGTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATAACAGATTATGATATGAAACCTCTTTCAGAGCTTGCTAGCCTGAAAAGTCTAGAGATTTCATCCAGTAAAGTGACTGATTTTGGCGTCAGTTTCCTGAGAGGGTTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTGCACTATCAAACTTGAATCTTAATAGATGCAATATCTCTGACAATGGGTGCAAAAAATTTTCACGACTGGAAAATTTGAAAGTATTAAACTTGGGATTTAATGTCATAACAGATACATGTTTAATTCACTTGAAAGGATTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGGTTGGTCAATTTGGCTGGCCATAAGCGATTGAACTGCTTGGAATTGTCTGATACAGAAGTTGGAAGCAATGGACTACAGCATTTGTCAGGATTGTCTAATCTGCAGAAAATAAATCTTTCTTTTACCATGGTTAGTGACGGTGGTTTAAGCAAATTGTGTGGACTCTCATCTCTGAAGTCCCTTAATTTGGATGCTTACCAAATTTCTGACATCGGCCTGTCAAACCTTACAAGTTTGACTGGCCTCACTGACCTGGATTTGTTTGGTGCACGAATAACAGATTTTGGTACAAACTATTTGAAAAAGTTTAAGAACCTGAGGTCTTTGGAAATATGTGGTGGAGCTTTGACGGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTGGTCTGCTTAAATTTATCACAAAACAGCAATCTTACAGACAAAACTCTTGAGTTAATTTCAGGGCTCACTGGGTTGGTTTCTTTGAATGTTTCAAATTCTCGTATCACCAATGCTGGTCTGCAGCATTTGAAAGCACTCAAAAACTTGAGATCTCTGACATTGGAGTCCTGCAAGGTGACAGCAAATGACATGAAGAAACTGAAATCAATATACCTCCCGAATCTGGTAAGCTTTCGCCCAGGTTAG 1734 0.3875 MGGACSRKREQDNEDSIIRGLSRRYSKCGSLKWWTSSFSYPSIDFQLRKGECPPLLDLCIQKINEDIDKYNSFSMLPRDISQLIFNNLVYSRRLTSVSLEAFRDCALQDLYLGEYDGVDDNWMDVISSQGSSLLSVDLSGSDVTDFGLTYLKDCESIISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSVSAKGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGVSFLRGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNISDNGCKKFSRLENLKVLNLGFNVITDTCLIHLKGLTKLESLNLDSCKIGDEGLVNLAGHKRLNCLELSDTEVGSNGLQHLSGLSNLQKINLSFTMVSDGGLSKLCGLSSLKSLNLDAYQISDIGLSNLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGALTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKALKNLRSLTLESCKVTANDMKKLKSIYLPNLVSFRPG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02772 577 Gene3D Ribonuclease Inhibitor 375 460 IPR032675 -
Viun10g02772 577 Gene3D Ribonuclease Inhibitor 478 572 IPR032675 -
Viun10g02772 577 Gene3D Ribonuclease Inhibitor 220 300 IPR032675 -
Viun10g02772 577 Gene3D Ribonuclease Inhibitor 126 219 IPR032675 -
Viun10g02772 577 SUPERFAMILY RNI-like 273 566 - -
Viun10g02772 577 SUPERFAMILY L domain-like 130 316 - -
Viun10g02772 577 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Viun10g02772 577 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
Viun10g02772 577 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Viun10g02772 577 FunFam Leucine-rich repeat family protein 474 573 - -
Viun10g02772 577 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Viun10g02772 577 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Viun10g02772 577 FunFam Predicted protein 118 219 - -
Viun10g02772 577 PANTHER UNCHARACTERIZED 46 244 - -
Viun10g02772 577 FunFam Leucine-rich repeat family protein 220 298 - -
Viun10g02772 577 SMART LRR_CC_2 542 566 IPR006553 -
Viun10g02772 577 SMART LRR_CC_2 349 373 IPR006553 -
Viun10g02772 577 SMART LRR_CC_2 154 179 IPR006553 -
Viun10g02772 577 SMART LRR_CC_2 301 325 IPR006553 -
Viun10g02772 577 SMART LRR_CC_2 228 253 IPR006553 -
Viun10g02772 577 SMART LRR_CC_2 421 445 IPR006553 -
Viun10g02772 577 SMART LRR_CC_2 493 518 IPR006553 -
Viun10g02772 577 Gene3D Ribonuclease Inhibitor 301 371 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02772 Viun-Chr10 40648000 40659091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02772 277 429 Receptor kinase-like Gene Family AT1G75820 28.571 6.94e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02772 - - gmx:100800666 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02772 10 40648000 40659091 Viun10g02772 10 40648000 40659091 ECH