Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02728 ATGAGTCCAAAAACAGCACAAGCCATAAACACTCTCTCTGGGGTGGTGGTTGGTGGTGAAATTTGCACAGCAATCTGCACAGAGCGAGAAAAAAAGGGCATGGAGGCCTTGCACTTGCACCGCGTGCTTCCCATGCCTGTTCCTCAAAACTCCATCTTTTGGCGTTCAATTGCTACCCAATTAACCACAATTCCCATTGCAAGGCCACCATTGCTTTGGAAATCAGCATCCACCTCCCAAATTTGCACCGCCAGAGCAGGGTGGTTTCTGGGTCTTGGAGCAGATACGAAGAAGACAAATTTACCTGACACCGTCAAAGCCGGTGACCCTGTTCTGCACGAGCCCGCTCGGGAAGTTGATCCCAGTGAGATAAAGTCGGAGAAAGTTCAGAAAACCATTGATGACATGATTCGGGTCATGAGGAAGGCTCCTGGAGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTCAGGATAATTGTTTTGGAGGATACCAAAGAGTATGTTAGTTATGTCTCGAAGGAAGAGGCTAGAGTCCAAGATAGAAGACCCTTTGATCTTTTGGTCATCCTGAATCCCAAACTAGAGAAGAAGAGCAAGAAGACTGCTCTATTTTTTGAAGGGTGCTTGAGTGTTGATGGGTTTAGAGCACTGGTGGAGCGATCCCTTGAGGTTGAGGTTACAGGTTTGGATCGCTATGGTGCACCAATCAAAATAAACGCTTCTGGGTGGCAGGCCAGGATTTTACAACATGAATGTGATCATTTGGATGGAACTCTGTATGTTGATAAGATGGTACCTAGAACTTTCAGAACTGTGGACAACCTTGACCTGCCTCTTGCTCAGGGATGTCCCAAACTTGGTCCTCGCTAA 873 0.4719 MSPKTAQAINTLSGVVVGGEICTAICTEREKKGMEALHLHRVLPMPVPQNSIFWRSIATQLTTIPIARPPLLWKSASTSQICTARAGWFLGLGADTKKTNLPDTVKAGDPVLHEPAREVDPSEIKSEKVQKTIDDMIRVMRKAPGVGLAAPQIGIPFRIIVLEDTKEYVSYVSKEEARVQDRRPFDLLVILNPKLEKKSKKTALFFEGCLSVDGFRALVERSLEVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLDLPLAQGCPKLGPR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02728 290 SUPERFAMILY Peptide deformylase 103 272 IPR036821 -
Viun10g02728 290 PRINTS Peptide deformylase signature 134 163 IPR023635 GO:0042586
Viun10g02728 290 PRINTS Peptide deformylase signature 207 218 IPR023635 GO:0042586
Viun10g02728 290 PRINTS Peptide deformylase signature 219 237 IPR023635 GO:0042586
Viun10g02728 290 PRINTS Peptide deformylase signature 238 267 IPR023635 GO:0042586
Viun10g02728 290 PANTHER PEPTIDE DEFORMYLASE 96 284 IPR023635 GO:0042586
Viun10g02728 290 Hamap Peptide deformylase [def]. 100 276 IPR023635 GO:0042586
Viun10g02728 290 FunFam Peptide deformylase 101 284 - -
Viun10g02728 290 Pfam Polypeptide deformylase 105 268 IPR023635 GO:0042586
Viun10g02728 290 Gene3D Peptide deformylase 100 289 IPR036821 -
Viun10g02728 290 CDD Pep_deformylase 105 261 IPR023635 GO:0042586
Viun10g02728 290 NCBIfam peptide deformylase 105 267 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02728 Viun-Chr10 40426223 40428957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02728 K01462 - gmx:100784292 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02728 10 40426223 40428957 Viun10g02728 10 40426223 40428957 ECH