Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02708 ATGCCCGAGACAGCTACTACACCGACCGATTCCTCCTCTGCTAGTCTATTCGAGCTTCTCACCGAAATGAAGAAGCAATCTTGTCCACAATCACTCACCTTACAAGCAAAATCTCCCTCCCAAAACTGCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTGAAGACCCTTTCTGGCATCAAGGCCAAAGGTGTTCGTGCAGATCTTATTGGCTCCATCATCACTCACTATGCCTCTAAATGGCTCCCTGATCTTTCTGCAGGTGATATGGTCGAAAAGGGTCTCACCCAAATGGAGGAATCACCGGAAAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAAGATGCAATTCCATGCAACTTTCTGCTAAGGCTTCTGAGAACGGCCAACATGGTTGGAGTTGAGGGTAACTACAGGCAAGAGCTTGAGAAACGTATTTCGTGGCAATTAGACCAAGCTTCGTTGAAGGAGTTGGTGATTCCATCTTTCAGCCACACTTGTGCTACACTCTTGGATGTTGAACTTGTCATTAGGCTGGTTCAGAGGTTCGTGAGTTTGGACAGTGAGGGAGCCAAGAGCGTTGCTTCTTTGGTTAAGGTGGCTAAGTTAGTCGATTCCTACCTCGCTGAGGCTGCTGTGGACTCCAATTTGAGCTTGAACGACTTCGTTACTCTCGCCGCCGCTCTTCCTAGCCATGCAAGAGCAACAGATGATGGCTTGTACCGTGCCATTGATACCTATCTTAAAGCACACCCAGCAGTGTCAAAGCAAGAAAGGAAGGGTCTTTGCAGGTTAATTGACAGCAGAAAACTGACCCCAGAGGCATCACTGCATGCAGCACAGAACGAACGATTTCCGGTGAGAGCAGTGATTCAGGTGCTGCTTTCTGAGCAAAGCAAGCTGACACGGCACGTGGATTGGAGCGGTTCGTTGGTGAGTGGGACAAGAAGCCCCAGTGCGTTGGAGTTACCGACACGGTGTCTGTCGAAGCGCGAGGTGAACGCGCAACAGCACGAGATAAGAAAGCTGAAGGACGACGTGCACAGGTTGCAGAGCCAGTGCAACGCCATGCAGGCTCAGATGGAGAGAATGGTGGAGAAGAAGAAGGGGTTCTTCAAGTGGAAGAAGTTTGCTTTTGGCAAAGTTGAACATGAAAAAATGGAACAAGAGCTTGAAGGGAATGGAATGCACACGCCTGCGGGTTTGAAAACCAGATTGGTCAATGTCAAAGGTAGCAAGCATAACAACAATGCTCACAGGTGGAGGAAATCTATGTCGTGA 1338 0.4925 MPETATTPTDSSSASLFELLTEMKKQSCPQSLTLQAKSPSQNCSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMVEKGLTQMEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGNYRQELEKRISWQLDQASLKELVIPSFSHTCATLLDVELVIRLVQRFVSLDSEGAKSVASLVKVAKLVDSYLAEAAVDSNLSLNDFVTLAAALPSHARATDDGLYRAIDTYLKAHPAVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLTRHVDWSGSLVSGTRSPSALELPTRCLSKREVNAQQHEIRKLKDDVHRLQSQCNAMQAQMERMVEKKKGFFKWKKFAFGKVEHEKMEQELEGNGMHTPAGLKTRLVNVKGSKHNNNAHRWRKSMS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02708 445 Pfam NPH3 family 46 295 IPR027356 -
Viun10g02708 445 Coils Coil 352 386 - -
Viun10g02708 445 PANTHER OS12G0117600 PROTEIN 26 405 IPR043454 -
Viun10g02708 445 ProSiteProfiles NPH3 domain profile. 45 319 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02708 Viun-Chr10 40338003 40340712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02708 44 388 EF-hand Containing Proteins AT3G44820 33.684 3.75e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02708 - - gmx:100777676 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02708 10 40338003 40340712 Viun10g02708 10 40338003 40340712 ECH