Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02671 ATGGTAGATGAAGAAGGAGCGCCAAAATTCCCAGGTTTTCCTTTCGAACCCTATTCGATTCAGACTGATTTCATGAACAGCTTGTATCAATCTCTCAATCAGGGAGGCGTGTCTATGTTGGAAAGCCCAACTGGGACAGGGAAGACCATGAGTGTGATTTGCAGTGCCTTGCAATGGGTGCTTGATAAGAGACTACAACAGGAAGCAGTTTGTGATGAGAATCCGGGGAATGGCGGTGGTGGCGGAGTTGGTTCAGATGACGAACCTGATTGGATGAGGGACTTTGTCGTCAACAAAGTCGAGAATAATAAGAAGGAAGAAAAGTACGGGTCTGTATGGGGAAAACCTCATAATAGTAAAAAGAGGACGGAAATTCGTAAGGATTTTAGGGTTATGGGTGCTGGAGAGGAGAAGGGGTGTGAGAGTCCGCAAAAGAAAATTGATCCTGTGGATTTTCTTGATAAGGATTTTTTATTGGAAGAATATGAGAGTGAAGATGAGAGAGGGCCAGGGAGTATGATGTCCAAGAGGAAGACTGTTAACACCTCCTTTAGTTCCTCTACTGAAGACGAGTCTAGCGAAGAGGAAGAAGAAGAGAAGAAGTTGAAGGTTTATTTCTGTAGTAGAACTCATTCACAGCTTTCGCAGTTCATAAAGGAGTTGCGGAGGACGGTATTCGCTAAAGAGATGAAGGTTGTGAGTTTAGGGTCTAGGAAAAATCTTTGCATTAATGAAGAGGTAGTTGCACTTGGAAACTCTACACGAATTAATGAGCGATGCTTGGAACTTCAGAAGAAAAAGAAAAATGATGCTACAAAAGTTAAGAACTTAAAAGTAGGTTCAGGGATACGCAGAACAAAGGCCACCTCTGGCTGCCCAATGCTTAGAAAACACAGAGTTCAACAAGATTTTAGAAATGAGGTATTTCAACAAAGACCCTTGGATATTGAAGATCTTGCAAATCTCGGAAGAACTATGGGAACTTGTCCGTATTATGGCTCTAGAAGCATGGTTCGAAGAGCTGATCTTGTTGTCCTACCATATCAATCTCTTCTGTCAAAATCATCTCGTGATGCCCTCGGCCTGAATTTGAAATCCAATATTGTTATAATAGACGAGGCTCATAATTTAGCTGATTCACTCATCAACATGTATGACTCCAAAATTACTTTATCACAGCTGGAGACTGTGCACAACCATTTGGAACGGTACTTTCTGAGGTTCCGGAGTCTTTTGGGACCAACTAATAGGAGATACATTCAAACTGTCATGGTCCTCACACAAGCTTTTCTCCGAGTACTACTTGATGATAAAGATGGAAATCTTATAGATTCCTGCTGTGATGTAGATCAAGCTTCTGAAAAAAGTAGCTCTGATTTTACTATGGCCATCAATGATTTTTTATTTGAACAAAATATAGACAATATCAACTTGGTCAAATTGTTGAAATATATTAAGGAAAGTAATGTCATGCACAAGGTTAGTGGTTATGGAGAAAAGTTTGCTGCCATGGCGACACAACATAAGATCGAGCAACATGCCGAGGAGGGAAGTTGTGTATCTGCTTTCCAGGCCTTGGCTAACATGTTACTTTCACTGACAAACAATGATGGTGATGGAAGGATAATAATTTCTAGGTTCAGGTTAACGAGCCTCAAGAAGCGTGGAGGATATCTGAAGTATGTTATGCTCAGTGGAGAAAAGATTTTTTCTGAGATTGTAGATGAAGCACATGCCGTTGTATTAGTAGGGGGAACACTTCAACCTATAGAAGAGACTAGGGAGAGACTCTTTCCATGGTTACCACCAAACCAATTGCATTTCTTTTCATGTGGGCATATTGTTCCTCCAGATAGCATTATGCCAATAGCTCTTGCACGGGGGCCTACTGGACGCACCTTTGATTTTAGCTTCGGCTCCAGGAGCTCACCAGACATGATGCGAGAACTGGGTCTTTTGCTGTGTAATCTGGTTACGGTGGTTCCGGAAGGAATTGTTGTCTTCTTCCCATCTTTTGATTATGAGAATAAAGTCTACGAGCATTGGGAATCATCTGGCATCCTTGAAAGGATTACAAAGAGGAAGCGTGTCTTTAGGGAGCCAAGAAATAACATGGATGTTGAATCCGTTCTCAAGGAATATAAAGATACCATTTATACATTATCGGGCATGAATTCAGAAGTAAACCAAGCATCTTATAGTGGTGCAATACTCCTTGCTGTTGTTGGTGCGAAGTTATCCGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTGTAGTCATGGTTGGACTACCCTATGCTAGCCCATCTGATATAGAGTTGTTGGAGAGGATAAAGCACATTGATCGTTTTCAAAATTTAAAGCTTGAAAATTCTAGCGTTTCTACAAGTTATGATCTATACAGTGGACATGCTGAAGGTGGTTTTGCCATCTTAAGAAGTTGCACTCACAGAGGAAAAGAATACTATGAAAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCTATCCGTCACATCAATGACTATGCAGCAATTTTGTTGGTTGATACAAGATACACATCTGATTCCTCAAAACGGAGTTTGGCTCACCCAGTCACCAAGCTCCCGCAGTGGATAAAAGATCGTCTTGTTTCTTCTGTTAGCTATGGTGAGACTGATCTCAACAGAATAAACATGTATGGTAACAACAACAGGCACGATTCAGCAATGGGAGCTGCTTCATGCAGTGAAAGCTCCGTTTGTTTTTCCAAGCAAAGACTGCAAACGAGCAAGAACGAGGAGAGAGCACAAGAGAAGAAGAAGAAGAAAGGAAGCTCACACCCCAGAAAAAAAGAGGACTTCAATTCAGAAAACATGAACAAGAAAGTTCATGCTTTAGCACAAAAGATGAAGGCAATGGATATGGTGGATGCGGGTGATCTAGAACGTGTGCTAGACATAGAAGAAGCACTGCACTACTATTCTCGACTTAAGAGCCCTGTCTATGTAGATATTGTGGACAATTTTTTCATGAGCATTCAATCAGAGTTATCTGCTTCGCAGCCATGTGCCAGCAGCATCAAACCCTCCAAGGAAAGGCTTGGTCCAATCCAGTTCAGATAA 3114 0.4152 MVDEEGAPKFPGFPFEPYSIQTDFMNSLYQSLNQGGVSMLESPTGTGKTMSVICSALQWVLDKRLQQEAVCDENPGNGGGGGVGSDDEPDWMRDFVVNKVENNKKEEKYGSVWGKPHNSKKRTEIRKDFRVMGAGEEKGCESPQKKIDPVDFLDKDFLLEEYESEDERGPGSMMSKRKTVNTSFSSSTEDESSEEEEEEKKLKVYFCSRTHSQLSQFIKELRRTVFAKEMKVVSLGSRKNLCINEEVVALGNSTRINERCLELQKKKKNDATKVKNLKVGSGIRRTKATSGCPMLRKHRVQQDFRNEVFQQRPLDIEDLANLGRTMGTCPYYGSRSMVRRADLVVLPYQSLLSKSSRDALGLNLKSNIVIIDEAHNLADSLINMYDSKITLSQLETVHNHLERYFLRFRSLLGPTNRRYIQTVMVLTQAFLRVLLDDKDGNLIDSCCDVDQASEKSSSDFTMAINDFLFEQNIDNINLVKLLKYIKESNVMHKVSGYGEKFAAMATQHKIEQHAEEGSCVSAFQALANMLLSLTNNDGDGRIIISRFRLTSLKKRGGYLKYVMLSGEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIALARGPTGRTFDFSFGSRSSPDMMRELGLLLCNLVTVVPEGIVVFFPSFDYENKVYEHWESSGILERITKRKRVFREPRNNMDVESVLKEYKDTIYTLSGMNSEVNQASYSGAILLAVVGAKLSEGINLSDGMGRCVVMVGLPYASPSDIELLERIKHIDRFQNLKLENSSVSTSYDLYSGHAEGGFAILRSCTHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYTSDSSKRSLAHPVTKLPQWIKDRLVSSVSYGETDLNRINMYGNNNRHDSAMGAASCSESSVCFSKQRLQTSKNEERAQEKKKKKGSSHPRKKEDFNSENMNKKVHALAQKMKAMDMVDAGDLERVLDIEEALHYYSRLKSPVYVDIVDNFFMSIQSELSASQPCASSIKPSKERLGPIQFR 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02671 1037 Pfam DEAD_2 206 394 IPR010614 GO:0003677|GO:0003678|GO:0005524
Viun10g02671 1037 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 423 IPR014013 GO:0005524
Viun10g02671 1037 SMART deadxpd 9 417 IPR006554 GO:0003678|GO:0016818
Viun10g02671 1037 CDD SF2_C_XPD 618 856 - -
Viun10g02671 1037 Gene3D - 632 872 IPR027417 -
Viun10g02671 1037 Pfam Helicase C-terminal domain 654 867 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Viun10g02671 1037 Gene3D - 178 432 IPR027417 -
Viun10g02671 1037 SMART ultradead3 13 452 IPR014001 -
Viun10g02671 1037 NCBIfam DNA repair helicase (rad3) 178 884 IPR013020 GO:0003678
Viun10g02671 1037 MobiDBLite consensus disorder prediction 163 196 - -
Viun10g02671 1037 MobiDBLite consensus disorder prediction 923 956 - -
Viun10g02671 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 390 IPR027417 -
Viun10g02671 1037 SMART Cxpdneu3 672 858 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Viun10g02671 1037 Gene3D - 14 74 IPR027417 -
Viun10g02671 1037 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 13 885 IPR045028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02671 Viun-Chr10 40068683 40077715 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02671 K11273 - gmx:106794132 1444.87