Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02605 ATGGGGAGTTCGGAAGGGGTGGGAACATCGTCGAAGCAATACGGTATCACGAAACCCATTTCGATGGCTGGACCAACAGTTTATGATTTGCACAGAACTCTTGAGTTAGAAAAGTTTCTCGCTGTTTCGGGACTTTATGAGAACAATGAGGAAGCTGCTAAGAGAGAGGAGGTTCTTTGCCGACTTGAACAGATAGTAAAACACTGGGTGAAGCAACTTACTCACCTAAAGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTATCATTTTGACTTTTGGTTCTTATCGCCTTGGTGTTCATGGTCCTGGGGCTGACTTAGACACAATATGCATTGGACCTTCCTACGTGAATCGCGAGGAGGATTTTTTCTACACATTGCATGATATCCTAGCTAACATGGAGGAGGTCTCTGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTACGCCAGTATTTCTCGCATGATTGTACCTGAAGACTTGGTTATATCTGATATCTCTCTCCTATACAATGTTGACGAGCCTACTGTGCGAAGTTTAAATGGCTGCAGAGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGTACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGACGAGGCATTTATTCCAATGTAACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTGTATCCAAATGCCGTTCCGAGTATGCTTGTTTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAAAACGAACTTGGTTTTTCTTTTTGGCATCCTCGTAAAAATCCTCGTGACCGATCCCATCTCATGCCAATTATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACAAGCACGCTTCGTGTTATGATGGAACAGTTCCAATTTGGCAACAAGATATGTGGGGATGTTGAACTGAACAAAGGTTGTTGGGAGGATCTGTTTGAACCATACAGTTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGTTGATGACTTGCGCAATTGGAAAGGATGGGTGGGATCACGCCTTCGGCAGTTGACCTTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCCTACCATCATGAGTATATGGATACCTCAAGGCAGAGTGCACATTGTGCTTTCTTTGTGGGTTTGCAGAGGAAGCAGGGAGAAGTAGTTAAAGAAGGCCAGCAATTTGATATACGAGGAACAATTGAAGAATTTTTGCATGCTGTCAATATGTACATGTTCTGGAAACCAGAGATGGAGATTTATGTTTCTCATGTTCGGAGAAGGCAAATTCCATGCTATGTGTTTCCTGATGGTTATAAAAGATTGCGATCATCAAGGCCAACCTTAAAATGTGAGAATCATAAACCATTTCGTAAAAATGAGGTTTCTGGGACTGAACATGTTGAGAGAATTCGTAAGAGGAAGAACAATGATGGGTTGGGTGTGAGGGAGGATGCAACACTGAAAAAGAAATGTACCAGTCTTCCTGAAGGTAGAGGGGCAAGTAGCAGTGTGTCTGATAGTCAACAGTTGTCAAGCAGTGAGCAAGAGTTGGGTAGAACAGACTCTCCTGAACCTGCCTCCAATTCTAGTGGGACTGCTTCTGTTGCAAGTGATAGTGGTTCTTCTGAAGATATTGGAGCCGTATCTATGGCAGGTTGTGTTGAAGATAACACCGGGGGTGTTGATACGATGAACAATGATGTTAGGTTTGAGAGTATTACATACGGGAACGGTTCTGGCACACTGGAGAACAGAGTGACAAGTTCTGAGGGAGTATTTCAACACGATCTACAGCAAAATGCAATGGTAGGGATGGTTCTTGATTCTACAGGAAAGGTTCATTCGGAGGCGGTGCAAGAACCAGTGATAAGGAGACTGGGTGTGGCATCTGCAGTGTGA 2058 0.431 MGSSEGVGTSSKQYGITKPISMAGPTVYDLHRTLELEKFLAVSGLYENNEEAAKREEVLCRLEQIVKHWVKQLTHLKGYTDQMVEDANAIILTFGSYRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVSELQPIPDAHVPVMKFKFDGISIDLLYASISRMIVPEDLVISDISLLYNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFSFWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWEDLFEPYSFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQSAHCAFFVGLQRKQGEVVKEGQQFDIRGTIEEFLHAVNMYMFWKPEMEIYVSHVRRRQIPCYVFPDGYKRLRSSRPTLKCENHKPFRKNEVSGTEHVERIRKRKNNDGLGVREDATLKKKCTSLPEGRGASSSVSDSQQLSSSEQELGRTDSPEPASNSSGTASVASDSGSSEDIGAVSMAGCVEDNTGGVDTMNNDVRFESITYGNGSGTLENRVTSSEGVFQHDLQQNAMVGMVLDSTGKVHSEAVQEPVIRRLGVASAV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02605 685 CDD NT_PAP_TUTase 54 209 - -
Viun10g02605 685 FunFam Putative poly(A) polymerase gamma 192 357 - -
Viun10g02605 685 Pfam Poly(A) polymerase predicted RNA binding domain 361 422 IPR007010 GO:0003723|GO:0043631
Viun10g02605 685 MobiDBLite consensus disorder prediction 505 544 - -
Viun10g02605 685 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Viun10g02605 685 PIRSF PolyA_polymerase 3 599 IPR014492 GO:0005634|GO:0043631|GO:1990817
Viun10g02605 685 Gene3D - 15 357 - -
Viun10g02605 685 MobiDBLite consensus disorder prediction 505 597 - -
Viun10g02605 685 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Viun10g02605 685 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0043631|GO:1990817
Viun10g02605 685 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Viun10g02605 685 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Viun10g02605 685 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Viun10g02605 685 FunFam Nuclear poly(A) polymerase 4 361 477 - -
Viun10g02605 685 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Viun10g02605 685 Pfam Nucleotidyltransferase domain 89 162 IPR002934 GO:0016779
Viun10g02605 685 MobiDBLite consensus disorder prediction 549 597 - -
Viun10g02605 685 PANTHER POLY A POLYMERASE 9 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02605 Viun-Chr10 39702879 39708297 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02605 K14376 - gmx:100783237 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02605 10 39702879 39708297 Viun10g02605 10 39702879 39708297 ECH