Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02558 ATGAACGGTGGTGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCAGCCGTTGGAGTGGAAATTCTCTCAGGTTTTCGGGGAACGTACGGCGGGGGAGGAAGTTCAGGAAGTGGACATTATTTCTGCTATTGAGTTTGACAAGTCTGGTGATCATCTTGCTACCGGTGATCGAGGTGGTCGAGTAGTTCTCTTTGAGAGAACAGATACAAAAGATCATCGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGTCAAACCGCCAATGGTGCTTTATTCCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAACGTCGATCCTAAAGCAATGGGAAATGGCTCTATTGCGAGTTCAAGTAGTTCCAGTAGCTCTAGATCATTTCTTGCAAATGGAGTATCTCCAGATGGACCATACAATTATTTAAGCAACGATTTCTCATTTCCACCAGGAGGCATACCTTCACTAAGATTACCATTGGTAACCAGCCATGAGACGAGTTTGGTGGCTCGATGCCGAAGAGTATATGCCCACGCACATGATTATCATATTAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAACTTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGATCCCGATCATTTTTCACAGAGATTATTGCTTCTATATCGGACATAAAATTCGGAAAGGATGGAAGATATATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATCAATATGGATTCTGGCCCAGTTGCTACATTCCAAGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTAAGTGGTGATGGATTGCGAGTTTCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACCGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGTCAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAACAGTATAACAAGAGTTGTAAGACGTGGAGCAGAAAGCACTGGAGTTGATGCAAATGGGAATTCTTTTGATTTCACTACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCCTGA 1545 0.4078 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHRGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISDMNVDPKAMGNGSIASSSSSSSSRSFLANGVSPDGPYNYLSNDFSFPPGGIPSLRLPLVTSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAESTGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02558 514 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 196 - -
Viun10g02558 514 PIRSF PPA2_B55 11 514 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 Gene3D - 36 197 IPR015943 GO:0005515
Viun10g02558 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Viun10g02558 514 MobiDBLite consensus disorder prediction 165 182 - -
Viun10g02558 514 MobiDBLite consensus disorder prediction 162 182 - -
Viun10g02558 514 Gene3D - 213 512 IPR015943 GO:0005515
Viun10g02558 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 514 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Viun10g02558 514 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 208 510 - -
Viun10g02558 514 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Viun10g02558 514 SMART WD40_4 105 145 IPR001680 GO:0005515
Viun10g02558 514 SMART WD40_4 272 312 IPR001680 GO:0005515
Viun10g02558 514 SMART WD40_4 222 261 IPR001680 GO:0005515
Viun10g02558 514 SMART WD40_4 331 369 IPR001680 GO:0005515
Viun10g02558 514 SMART WD40_4 31 66 IPR001680 GO:0005515
Viun10g02558 514 MobiDBLite consensus disorder prediction 442 461 - -
Viun10g02558 514 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02558 Viun-Chr10 39409455 39418325 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02558 K04354 - gmx:100789058 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02558 10 39409455 39418325 Viun5g03810 5 46686274 46694569 ECH
Viun10g02558 10 39409455 39418325 Viun10g02558 10 39409455 39418325 ECH
Viun5g03810 5 46686274 46694569 Viun10g02558 10 39409455 39418325 PCT