Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02543 ATGGCTCAGCCGCCGTTCGATCCGTACTACCTGTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTCCCGGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCTTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTGGCGTTTGCTACGTTTTTCAACCACCAATCGGCAATGGCAGCGCTGCACTCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCCAGGAGAAAGCGAAAACCAGGCGGTGGAGCCTACGTGGTTATAGACAAAAGGAGCAAAGGGGAGCGTGATGTTCAAGGATCATCAAGTGATGATGGTGACAGTGACCCTGATGAACCATCAGACAGTGACGGCAACCATGGTGATATACCAATCATACCAAGTGATGATGCAGCTGTTGGTTCTGGCCATGCTATACCCGTGGAGCAACATGAAAAGGGCAGTGCCGGAGGACTGTGTTCCACTCTATTTATTGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTAAAGCAAGCCTTTTCTGCATATGCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCGTGGAGGAGCTTCAAGGAAGCTTGCTTCCATCATCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 795 0.4994 MAQPPFDPYYLYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHSLNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGERDVQGSSSDDGDSDPDEPSDSDGNHGDIPIIPSDDAAVGSGHAIPVEQHEKGSAGGLCSTLFIANLGPNCTEDELKQAFSAYAGFNMVKMRSRGGMPVAFADFEEIDQAAKVVEELQGSLLPSSDRGGMHIEYARSKMRKH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02543 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Viun10g02543 264 FunFam RNA-binding protein with multiple splicing 174 264 - -
Viun10g02543 264 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Viun10g02543 264 Gene3D - 16 103 IPR012677 -
Viun10g02543 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Viun10g02543 264 MobiDBLite consensus disorder prediction 117 131 - -
Viun10g02543 264 Gene3D - 180 264 IPR012677 -
Viun10g02543 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Viun10g02543 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Viun10g02543 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Viun10g02543 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Viun10g02543 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 134 260 - -
Viun10g02543 264 MobiDBLite consensus disorder prediction 100 162 - -
Viun10g02543 264 SUPERFAMILY RNA-binding domain, RBD 21 244 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02543 Viun-Chr10 39300835 39304177 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02543 - - gmx:100783764 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02543 10 39300835 39304177 Viun10g02543 10 39300835 39304177 ECH