LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g02539	ATGGATTATCAACAGACCGGTGTATCGCTGAGATCGAGCTTGACGTTTGGAGAGACGCTGTGTGCGGTGTTCATTCCGCTCATAGGACTTGTTGAAGCTTTGGTTTTCAGCTTAACCGGTTGCTTCGATTTCCATTCTCCGGCGAAGAAGAAGAAACCCTCTTCTACTACCTTCGATGACATTCTTGCCCTCGCCAAGGATTCTCAGTTTACTGTTAATGAAATTGAGGCTTTGCACGAGTTGTTCAAGAAGTTGAGTAGCTCAATCATTGACGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTTAAGACCACTACTGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTTTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAATATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGACTTTTCTTTTAGAATGTATGACTTGAGACAGACCGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTTTGTCAGAATGTGGCATTGATCTGGATGATGAAACCCTTGAAACCATTATTAATAAGACATTTCAAGACGCCGATGCTGATAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCACTCGAAACCCAACACTCTTGAAGCACATGACTCTTCCTCATCTGGCGGACATCAGCACACTGTTTACCAGTTTCATTTTCAACACCGGAGTTGATGATTCTCACTGGCAACCATAA	777	0.417	MDYQQTGVSLRSSLTFGETLCAVFIPLIGLVEALVFSLTGCFDFHSPAKKKKPSSTTFDDILALAKDSQFTVNEIEALHELFKKLSSSIIDDGLIHKEELTLALFKTTTGENLFLDRVFDVFDEKRNGVIEFEEFVHALNIFHPCTPLEKKIDFSFRMYDLRQTGYIEREEVRQMVVAILSECGIDLDDETLETIINKTFQDADADKDDKISKEEWKAFVTRNPTLLKHMTLPHLADISTLFTSFIFNTGVDDSHWQP	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g02539	258	SMART	efh_1	195	223	IPR002048	GO:0005509
	Viun10g02539	258	SMART	efh_1	114	142	IPR002048	GO:0005509
	Viun10g02539	258	SMART	efh_1	151	179	IPR002048	GO:0005509
	Viun10g02539	258	SUPERFAMILY	EF-hand	64	243	IPR011992	-
	Viun10g02539	258	ProSiteProfiles	EF-hand calcium-binding domain profile.	147	182	IPR002048	GO:0005509
	Viun10g02539	258	PRINTS	Recoverin family signature	211	231	-	-
	Viun10g02539	258	PRINTS	Recoverin family signature	118	139	-	-
	Viun10g02539	258	PRINTS	Recoverin family signature	165	183	-	-
	Viun10g02539	258	ProSiteProfiles	EF-hand calcium-binding domain profile.	110	145	IPR002048	GO:0005509
	Viun10g02539	258	FunFam	calcineurin B-like protein 3	60	253	-	-
	Viun10g02539	258	Pfam	EF hand	115	135	IPR002048	GO:0005509
	Viun10g02539	258	Pfam	EF-hand domain pair	150	219	IPR002048	GO:0005509
	Viun10g02539	258	ProSitePatterns	EF-hand calcium-binding domain.	204	216	IPR018247	-
	Viun10g02539	258	ProSiteProfiles	EF-hand calcium-binding domain profile.	191	226	IPR002048	GO:0005509
	Viun10g02539	258	PANTHER	CALCINEURIN B	40	254	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Viun10g02539	258	Gene3D	-	62	254	-	-
	Viun10g02539	258	CDD	EFh	115	176	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g02539	Viun-Chr10	39276902	39280120	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g02539	31	254	EF-hand Containing Proteins	AT5G55990	54.464	3.45e-83	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g02539	K06268		-	gmx:100306023	427.172