Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02517 ATGATTGGAAGCTTCAACCAGACTGATTCAATCGAGTGCTGTGAAGCTGCAATGCAGAAATCCTATTCTCAGGAATCTGGTCCTGTCATGAAGAAGTCAAAAACCAGAACTTTGGCTTCTCAGAATGTAGATTATTGTGAAATGGCAGAGAGTGAGGACAGGCTTAGTGACATGCCAGATTGTCTTATTCATCACATCTTGTCATTTCTGGAAACAAAGGATGCTATTCAAACTTCTGTTTTATCAAAGAGGTGGAGGTATCTTTGGGTTTCAGTTCCCTGCTTGAATTTCAGTAGCAAATCATTCACCCGGTTGGTTGATTTCAAGAAGTTTGTGCTGTGGGTTCTAAACCACCGTGATTCTTCTCATGTCAAGCTTCTTGTTTACTATCGCTTCGGGGTAGATTATGCCACAGATCAACATCTATTGAATAAGGTTATTGAGTATGCAGCATCACATGGGGTTGAAGAAATCAAAATCAATCTCCGTGCAAAAACATCTGGTAGTCCTCCTGTTGAAATTCCTTTGTCTCTATTTTCTTGCCAATCTTTGAAAAAGCTTGAGTTAAAAGATTGCCATCCTACGAATGTGTCATCCCCTATAGGTTGCAAATCATTGGACTTGTTGCATCTGGAACAGTTTGCAATGGATCCTGCTGCTGCGGACTTTTCAAATCCATTTGCAAGTTTGGCAGAACTATTTGGTTTTACAACGTTGACAACTCTGCATCTAAATAACTTCACTCTGTGTTACACAGGAATTGACTGTCTGGATCCATTTGCTAATTGTGTCCATATGAAGAACTTGCACTTAAGTGAAATGTCCTTTAAGTCAGATTTGAACCCTAAGGATTTTGTGATATCAGCTCCCAAACTCAGTAACTTGAATCTAATGTGCAACCGCTTTAAATGCAAGATTGTAGTTTCTGCACCACAGCTTTCCAATTTCACTTACTTGTATTCTACACCTTGTGCTTTCTTTGAGTTCCGGCTTCCATCTTTGGATGGCTTGGTCATTGATATTCATGAACCACATGACCGATTTGAAAAATGTCGTCGAAGGAAAAGAGAGGAGACTCTACATGGTTTGATCAATATGTTACGCGGATATCATAGTGCAGAAGCTGTTAAACTATCTTTCTGCACAGCTGCGGTTACTTGTGGGACTGCAGCCCTGTTAAAACCAGAACGTTTGCCTCCTAGTAAATTGAAGTCATTGAACTTTGGAGTGGGATCAACATATAAAATCTTCATCAACAACCTTGACCATATAACTGCCTACTTCCGCAATTGTTCTCAGCATGCAGACTTTGAGATTGTGGCTGTTTAG 1329 0.4011 MIGSFNQTDSIECCEAAMQKSYSQESGPVMKKSKTRTLASQNVDYCEMAESEDRLSDMPDCLIHHILSFLETKDAIQTSVLSKRWRYLWVSVPCLNFSSKSFTRLVDFKKFVLWVLNHRDSSHVKLLVYYRFGVDYATDQHLLNKVIEYAASHGVEEIKINLRAKTSGSPPVEIPLSLFSCQSLKKLELKDCHPTNVSSPIGCKSLDLLHLEQFAMDPAAADFSNPFASLAELFGFTTLTTLHLNNFTLCYTGIDCLDPFANCVHMKNLHLSEMSFKSDLNPKDFVISAPKLSNLNLMCNRFKCKIVVSAPQLSNFTYLYSTPCAFFEFRLPSLDGLVIDIHEPHDRFEKCRRRKREETLHGLINMLRGYHSAEAVKLSFCTAAVTCGTAALLKPERLPPSKLKSLNFGVGSTYKIFINNLDHITAYFRNCSQHADFEIVAV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02517 442 Pfam F-box domain 55 91 IPR001810 GO:0005515
Viun10g02517 442 Gene3D Ribonuclease Inhibitor 142 337 IPR032675 -
Viun10g02517 442 CDD F-box_AtFBL13-like 55 89 - -
Viun10g02517 442 SUPERFAMILY L domain-like 174 324 - -
Viun10g02517 442 SUPERFAMILY F-box domain 45 104 IPR036047 GO:0005515
Viun10g02517 442 Gene3D - 39 95 - -
Viun10g02517 442 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Viun10g02517 442 SMART fbox_2 58 98 IPR001810 GO:0005515
Viun10g02517 442 PANTHER OS11G0201299 PROTEIN 50 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02517 Viun-Chr10 39122473 39126496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02517 51 219 EF-hand Containing Proteins AT5G41840 31.053 2.22e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02517 - - vun:114167379 874.389