Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02409 ATGATTCACACTCTTTTTCTTTTCGCTCTTCTCTCATCAACTTCCCATGCTTTCGTGAACGATTTCTGCGTAGCAAACCTAAAGGGTCCCGATGGCCCTTCAGGCTATGAGTGCAAGCCACCGAACACAGTGACAGTGGATGATTTTGTGTTCTCTGGTTTAGTTGCAGGAAACACCTCAGGAATTTTCAATGCTGCAGTAACCCCTGCATTTGTGACTGAACTCCCCGGTGTGAACGGTCTTGGTTTATCTGCAGCACGGTTAGACCTAGCCAAGGGTGGATTGGTTCCGGCGCACTCACACACTGCTTCAAGTGAAATTCTGATAATGGTGAAGGGTGAAATCACTGCTGGGTTCATAACACCTGGTGCAGTTTATCAGAAGACACTGAAACCAGGAGATGTTATGGTTTTCCCACAAGGACTCTTGCATTTCCAAGTAAATTCTGGTAAGGGAAAAGCCACTGCTTTTCTTGCTTTCAGTAATCCAAGCCCAGGAGCACAACTACTTGATCTTCTTCTGTTCGGCAACAACTTGCCTTCGGAGTTCATTTCACAAATTACTCTGCTTGATTATGCACAAGTGAAGAAGCTTAAGCCTCGTTTTGGTGGCAGAGGATAG 621 0.4573 MIHTLFLFALLSSTSHAFVNDFCVANLKGPDGPSGYECKPPNTVTVDDFVFSGLVAGNTSGIFNAAVTPAFVTELPGVNGLGLSAARLDLAKGGLVPAHSHTASSEILIMVKGEITAGFITPGAVYQKTLKPGDVMVFPQGLLHFQVNSGKGKATAFLAFSNPSPGAQLLDLLLFGNNLPSEFISQITLLDYAQVKKLKPRFGGRG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02409 206 FunFam Auxin-binding protein ABP19a 16 205 - -
Viun10g02409 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 198 - -
Viun10g02409 206 Gene3D Jelly Rolls 16 205 IPR014710 -
Viun10g02409 206 SUPERFAMILY RmlC-like cupins 17 200 IPR011051 -
Viun10g02409 206 CDD cupin_OxOx 15 202 IPR001929 GO:0030145
Viun10g02409 206 Pfam Cupin 63 195 IPR006045 -
Viun10g02409 206 PRINTS Germin signature 99 119 IPR001929 GO:0030145
Viun10g02409 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Viun10g02409 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Viun10g02409 206 SMART Cupin_1_3 52 196 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02409 Viun-Chr10 38365526 38366467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02409 1 204 Miscellaneous Gene Families AT5G20630 57.282 3.63e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02409 - - gmx:100813853 335.88