Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02408 ATGAAGAAGATAACTCATAGTCTATTCCTCTTCACTATTCTCTCATGCACTTCCAATGCTGCTGTCAATGATTTCTGTGTAGCAGACCTAAAGGGACCTGATAGCCCTTCAGGATATCAGTGCAAGCCACCTAACACAGTGACGGTGGATGACTTTGTGTTCTCTGGCTTGGTAGCGGGAAATACCACAAACACCTTCAATGCTGCATTAACCTCTGCATTCGTCACTGATTTTCCAGGTCTGAATGGTCTTGGTGTTTCCGCAGCACGGTTAGACATAGCAAAAGGTGGATCAATCCCAATGCACACACACCCTGCTGCCACTGAACTTTTGATAGTGGTGGAAGGTCAAATCACCGCTGGTTTTATGACACCATCTGCAGTTTATTCGAAGACTCTGAAAGCAGGAGATGTTATGGTTTTCCCACAAGGACAACTTCATTTTCAAGTGAATTCTGGAAACGGAAAAGCCACTGCTTTTCTTGCTTTCAGTAGCGCAAACCCTGGAGCACAACTTCTTGACCTTTTGTTGTTTGGTAACAGTTTACCTTCTGAATTGATTGCACAAACTACCTTCCTTGATGTAGAACAAGTGAAGAAGCTTAAGGCGCGTTTTGGTGGCAGAGGAATTGATTATTCCTGA 642 0.4393 MKKITHSLFLFTILSCTSNAAVNDFCVADLKGPDSPSGYQCKPPNTVTVDDFVFSGLVAGNTTNTFNAALTSAFVTDFPGLNGLGVSAARLDIAKGGSIPMHTHPAATELLIVVEGQITAGFMTPSAVYSKTLKAGDVMVFPQGQLHFQVNSGNGKATAFLAFSSANPGAQLLDLLLFGNSLPSELIAQTTFLDVEQVKKLKARFGGRGIDYS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02408 213 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Viun10g02408 213 FunFam Auxin-binding protein ABP19a 19 208 - -
Viun10g02408 213 CDD cupin_OxOx 18 205 IPR001929 GO:0030145
Viun10g02408 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 202 - -
Viun10g02408 213 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Viun10g02408 213 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Viun10g02408 213 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Viun10g02408 213 SMART Cupin_1_3 55 199 IPR006045 -
Viun10g02408 213 SUPERFAMILY RmlC-like cupins 24 207 IPR011051 -
Viun10g02408 213 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Viun10g02408 213 Pfam Cupin 59 199 IPR006045 -
Viun10g02408 213 Gene3D Jelly Rolls 18 208 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02408 Viun-Chr10 38360146 38360949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02408 1 207 Miscellaneous Gene Families AT5G20630 57.895 8.89e-81 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02408 - - gmx:100783206 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02408 10 38360146 38360949 Viun10g02408 10 38360146 38360949 ECH