Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02406 ATGATTAACATTTTTCTCCTCTTGGCTCTTCTATCATTCACTTCCGATGCGGCTGTCAATGATTTCTGTGTGGCAGAGTTAAAGGGCCCAGATAGCCCTTCAGGCTATCACTGCAAGCCACCGAAATCAGTGACAGTGGATGACTTTGTGTTTTCTGGCTTTGTAGCTGGAAACACCACAAACATTTTCCATGCTGAATTAACCTCTACAGTTGTCACTGATTTTCCAGGTTTGAATGGTCTCGGTGTTTCCGCAGCACGGTTAGACATAGCGAAAGGTGGAGCAGTCCCAATGCACACACACCCTGCTGCCACTGAACTTTTGATAATGGTGGAAGGTCAAATCACTGCTGGTTTTGTGACACCATTTGAAGTTTACAAGAAGACTCTGAAAGCAGGAGATGTTATGGTTTTCCCACAAGGACTACTGCATTTTCAGGTGAATTCTGGAAAAGGAAAAGCCAGTGCTTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGTACAATTACTTGACCTTGTATTGTTTGGTAACAGCTTATCTTCTGAATTGATTGCACAAACTACCTTCCTTGACGTTGCCCAAGTGAAGAAGCTTAAGGCACGTTTCGGTGGCAGAGGCTAG 621 0.4461 MINIFLLLALLSFTSDAAVNDFCVAELKGPDSPSGYHCKPPKSVTVDDFVFSGFVAGNTTNIFHAELTSTVVTDFPGLNGLGVSAARLDIAKGGAVPMHTHPAATELLIMVEGQITAGFVTPFEVYKKTLKAGDVMVFPQGLLHFQVNSGKGKASAFLAFSSANPGVQLLDLVLFGNSLSSELIAQTTFLDVAQVKKLKARFGGRG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02406 206 FunFam Auxin-binding protein ABP19a 16 205 - -
Viun10g02406 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Viun10g02406 206 PRINTS Germin signature 99 119 IPR001929 GO:0030145
Viun10g02406 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Viun10g02406 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 199 - -
Viun10g02406 206 ProSitePatterns Germin family signature. 94 107 IPR019780 GO:0030145
Viun10g02406 206 Gene3D Jelly Rolls 16 205 IPR014710 -
Viun10g02406 206 SMART Cupin_1_3 52 196 IPR006045 -
Viun10g02406 206 Pfam Cupin 56 195 IPR006045 -
Viun10g02406 206 CDD cupin_OxOx 17 202 IPR001929 GO:0030145
Viun10g02406 206 SUPERFAMILY RmlC-like cupins 48 203 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02406 Viun-Chr10 38353582 38354527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02406 1 204 Miscellaneous Gene Families AT5G20630 56.796 7.33e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02406 - - gmx:100527498 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02406 10 38353582 38354527 Viun10g02406 10 38353582 38354527 ECH