Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02405 ATGAAGAAGATAACTGAGATTGTATTCCTCTTCACTATTCTCTCATGCACTTCCTATGCTGCTGTCAATGATTTCTGTGTAGCAGACCTAAAGGGCCCTGATAGCCCTTCAGGCTATCAGTGCAAGCCACCTAACACAGTGACGGTGGATGACTTTGTGTTCTCTGGCTTGATAGCCGGAAATACCACAAACACCTTCAATGCTGCATTAACCTCTGCATTCGTCACTGATTTTCCAGGTCTCAATGGTCTTGGTGTTTCCGCAGCACGGTTAGACATAGCAAAAGGTGGATCAATCCCAATGCACACACACCCTGCTGCCACTGAACTTTTGATAGTGGTGGAAGGTCAAATCACCGCTGGTTTTATGACACCATCTGCAGTTTATTCGAAGACTCTGAAAGCAGGAGATGTTATGGTTTTCCCACAAGGACAACTTCATTTTCAAGTGAATTCTGGAAAGGGAAAAGCCACTGCGTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGCACAACTTCTTGATCTCTTGTTGTTTGGTAACAGTTTACCTTCTGAGTTGATTGCAGAAACTACCTTCCTCGACGTTGCCCAAGTGAAGAAGCTTAAGGCTCGTTTTGGTGGCAGAGGCTAG 630 0.4556 MKKITEIVFLFTILSCTSYAAVNDFCVADLKGPDSPSGYQCKPPNTVTVDDFVFSGLIAGNTTNTFNAALTSAFVTDFPGLNGLGVSAARLDIAKGGSIPMHTHPAATELLIVVEGQITAGFMTPSAVYSKTLKAGDVMVFPQGQLHFQVNSGKGKATAFLAFSSANPGAQLLDLLLFGNSLPSELIAETTFLDVAQVKKLKARFGGRG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02405 209 Pfam Cupin 59 199 IPR006045 -
Viun10g02405 209 Gene3D Jelly Rolls 19 208 IPR014710 -
Viun10g02405 209 CDD cupin_OxOx 20 205 IPR001929 GO:0030145
Viun10g02405 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 202 - -
Viun10g02405 209 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Viun10g02405 209 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Viun10g02405 209 FunFam Auxin-binding protein ABP19a 19 208 - -
Viun10g02405 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Viun10g02405 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Viun10g02405 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Viun10g02405 209 SMART Cupin_1_3 55 199 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02405 Viun-Chr10 38351019 38351808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02405 1 207 Miscellaneous Gene Families AT5G20630 59.330 3.29e-84 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02405 - - gmx:100527498 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02405 10 38351019 38351808 Viun10g02405 10 38351019 38351808 ECH