Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02396 ATGGCCCTTACAAAACAAATCATGGGTTCTTCATTGCTAGAGAGGTCCTTGTTTGTTCCCTCTTCCCCTTCGTCATCACTTTTCAACCAAACTCGTTTTTTAGTTCCTTTGGAGAGCAAGAGAGTTGTGAGGGTAAGGAAGGCTGCAAAGTTTCCTGTGGCGACTATAAGTGAAGATTTGCTGAAGGGTTCTTCTTCTTCTTCTTCATCATCATCATCACCATCATCTTCTTCCACTTCTTTAGTTTCTGCAGAGAAGCCAGTGAAATTTAAGGTTAGAGCTGTGATTACAGTGAGGAACAAGATCAAAGAGGATTTGAAAGAGACCATTGTGAAGCATATTGATGCTCTAGCTGACAAGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACTGAGATTGATCCAAAGACCAAAGCTGCAAAGAAGAGTTCTGAAGCAGTGCTGAAGGATTGGTCGAAGAAGTCCAATCTTAAGGTGGAGAGAGTTAATTACACAGCTGAATTCATAGTTGACTCTAACTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTTTTAGAAAGCATAACCATTGAAGGATTTGCCACTGGACCAGTTCATTTCCCCTGCAATTCCTGGGTTCAAGCAAGAAAAGATCATCCCGGAAAGAGGATTTTCTTTTCCAATAAGCCTTATTTACCTGGTGATACACCTGCTGGACTTAGATTATTTAGGGAGAAAGAGCTGAGAAATCTGAGAGGTGATGGCAAAGGAGTGAGAAACTTATCTGACAGAATATATGATTATGATATATACAATGATTTGGGAAATCCAGACAAAGGTATTGAATATGCCAGACCAAATCTTGGTGGATCAGATATGTATCCATACCCAAGACGGTGTCGTACAGGCCGTGAACCCAGCGACACAGATATGTATGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGAGATGAACGTTTTGAGGAGTCGAAGCAGAACACATTCACTGTGAAGAGGCTGAAGGCAGTGCTGCATAACTTGATTCCTGGTCTTAAGGCCAGTCTTTCTGCTAGCAACCAGGACTTCAATGAATTCTCAGATGTCGATGGCCTTTACAGTGAAGGGTTGCTCATAAAGTTAGGGTTGCAAGATGACGTGTTGAAAAAAATCCCTTTTGTCAGCAAGATCCAAGAGTCCAGCCAGGGACTTCTCAAATATGACACCCCCAAGATTATTTCCAAGGACAAATTTGCATGGTTGCGAGATGACGAATTTGCCCGTCAAGCAATTGCAGGAGTTAACCCTGTTAGCATTGAGAAGCTCAAAGTTTTTCCACCAGTTAGCAAACTAGACCCTCAAATTTATGGCCCCCAAGAGTCTGCTCTCAAAGAAGAACATATTTTGAGTCAACTCGATGGCATGACAGTCCAAGAGGCAATAAATGAAAACAAGCTGTTTATCGTTGACTACCATGATATCTACCTTCCGTTCCTGGAAGGGATCAATGCCCTTGATGGTAGGAAATCATATGCCACACGTACCATATTTTTCTCCACACCACGTGGCACTCTCAAACCTGTGGCCATAGAACTTAGCCTCCCTTTTGCTGGACCTAGTTCTAGATCAAAGCGTGTGGTTACACCACCTGTTGATGCAACCACTAACTGGATGTGGATGCTTGCCAAGGCACATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCACTGGTTACGTACACATGCAAACTTGGAACCATTTATTTTGGCTGCTCATAGGCAATTAAGTGCCATGCATCCAATTTACAAACTATTGGACCCACACATGAGGTATACTTTGGAGATCAATGCCTTGGCTAGACAGAGTTTAATCAATGCTGATGGAATCATTGAAAATTGCTTCACCCCTGGACGCTACGCTATGGAGATTAGTTCTGCTGCTTACAAGAACTTTTGGCGCTTTGACATGGATAGTCTCCCTGCAGATCTCATCCGCAGGGGAATGGCAGAACCTGACCCAACACAACCACATGGTCTAAAGCTGACATTGGAAGACTACCCTTATGCAGCCGATGGAATACTAATCTGGTCTGCCATAGAAGACTGGGTTCGAACCTATGTGAACCACTATTACCCTCATGCAAGTCTCATATGCAACGACAAAGAGCTACAAGCTTGGTACTCTGAGTCCATCAATGTGGGTCATGCTGATCTTAGGCATGAAAGTTGGTGGCCTACATTGAACAACAGTGAGGATCTTGTCTCCATTCTTTCCATATTGATCTGGAACGCATCTGCACAACATGCTGCTCTTAACTTTGGGCAATACCCTTACGGTGGGTATGTGCCTAATCGTCCACCACTGACGAGAAGATTAATACCAGAAGAGGGTGATCCAGAATACGCAAGTTTCCTTGCTGACCCTCAGAAATATTATCTGAATGCATTGCCTAGCTTGTTGCAAGCTACGAAATTTATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGGGAGAGACAACAACCTTCGATCTGGTCTGGTGATGCTGAGATGATCGAGGCGTTCTATGATTTCTCTGCAAAGGTTAGACAGATAGAGAAGGTGATTGATAGCAGGAACCTTGATAGGAGTTTAAAGAACCGATGTGGGGCAGGGGTTTTGCCTTATGAGTTGCTTGCTCCTAGCTCTGAATCTGGTGTTACATGCAGAGGGGTACCCAATAGTGTGTCTACATAA 2775 0.4393 MALTKQIMGSSLLERSLFVPSSPSSSLFNQTRFLVPLESKRVVRVRKAAKFPVATISEDLLKGSSSSSSSSSSPSSSSTSLVSAEKPVKFKVRAVITVRNKIKEDLKETIVKHIDALADKIGRNVVLELVSTEIDPKTKAAKKSSEAVLKDWSKKSNLKVERVNYTAEFIVDSNFGEPGAITVTNKHQKEFFLESITIEGFATGPVHFPCNSWVQARKDHPGKRIFFSNKPYLPGDTPAGLRLFREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIEYARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSASNQDFNEFSDVDGLYSEGLLIKLGLQDDVLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVSIEKLKVFPPVSKLDPQIYGPQESALKEEHILSQLDGMTVQEAINENKLFIVDYHDIYLPFLEGINALDGRKSYATRTIFFSTPRGTLKPVAIELSLPFAGPSSRSKRVVTPPVDATTNWMWMLAKAHVCSNDAGVHQLVNHWLRTHANLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQSLINADGIIENCFTPGRYAMEISSAAYKNFWRFDMDSLPADLIRRGMAEPDPTQPHGLKLTLEDYPYAADGILIWSAIEDWVRTYVNHYYPHASLICNDKELQAWYSESINVGHADLRHESWWPTLNNSEDLVSILSILIWNASAQHAALNFGQYPYGGYVPNRPPLTRRLIPEEGDPEYASFLADPQKYYLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEMIEAFYDFSAKVRQIEKVIDSRNLDRSLKNRCGAGVLPYELLAPSSESGVTCRGVPNSVST 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02396 924 ProSiteProfiles PLAT domain profile. 106 228 IPR001024 GO:0005515
Viun10g02396 924 Gene3D PLAT/LH2 domain 77 232 - -
Viun10g02396 924 PRINTS Lipoxygenase signature 560 577 IPR013819 GO:0016702|GO:0046872
Viun10g02396 924 PRINTS Lipoxygenase signature 598 618 IPR013819 GO:0016702|GO:0046872
Viun10g02396 924 PRINTS Lipoxygenase signature 578 595 IPR013819 GO:0016702|GO:0046872
Viun10g02396 924 MobiDBLite consensus disorder prediction 61 80 - -
Viun10g02396 924 Pfam PLAT/LH2 domain 143 227 IPR001024 GO:0005515
Viun10g02396 924 Pfam Lipoxygenase 241 907 IPR013819 GO:0016702|GO:0046872
Viun10g02396 924 PRINTS Plant lipoxygenase signature 409 425 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 296 315 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 224 245 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 364 385 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 448 467 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 836 850 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 263 279 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 515 539 IPR001246 GO:0016491
Viun10g02396 924 PRINTS Plant lipoxygenase signature 198 216 IPR001246 GO:0016491
Viun10g02396 924 SMART LH2_4 90 229 IPR001024 GO:0005515
Viun10g02396 924 CDD PLAT_LH2 90 229 IPR042057 -
Viun10g02396 924 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 231 924 IPR013819 GO:0016702|GO:0046872
Viun10g02396 924 FunFam Lipoxygenase 557 923 - -
Viun10g02396 924 FunFam Lipoxygenase 233 335 - -
Viun10g02396 924 Gene3D - 557 923 - -
Viun10g02396 924 ProSitePatterns Lipoxygenases iron-binding region signature 2. 605 615 IPR020834 GO:0016702|GO:0046872
Viun10g02396 924 Gene3D - 233 335 - -
Viun10g02396 924 SUPERFAMILY Lipoxigenase 234 923 IPR036226 -
Viun10g02396 924 Gene3D - 336 421 IPR027433 -
Viun10g02396 924 PANTHER LIPOXYGENASE 105 923 IPR000907 GO:0016702|GO:0034440|GO:0046872
Viun10g02396 924 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 90 232 IPR036392 GO:0005515
Viun10g02396 924 FunFam Lipoxygenase 423 555 - -
Viun10g02396 924 Gene3D - 422 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02396 Viun-Chr10 38244096 38249398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02396 1 923 Acyl Lipid Metabolism Gene Families AT1G17420 71.290 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02396 K00454 - gmx:100793614 1727.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02396 10 38244096 38249398 Viun10g02396 10 38244096 38249398 ECH