Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02293 ATGGTGGTGGCTGCGGGCGCTAAGTTTAATTTGAGAAGAGGTAATAGTTCTTCTCATAATGGTATCAACGGTTATAGCGGTGATGCAGAACTTTCCAGAATTAGCAGGGGTGGCCGTTTCACACCAGTGACAGAGGTGGAGAGAGACCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATGGATCCACAGAACCAAGGCCTACGTGAAAGTAACTGCAGATCATTGTGGTTGCCGAGGAATGAGATGATTCTCGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGTCTCCAGGAATTCTGGGTTGGAAATGAAGAGCTTGTTCACATGTATGAGGAGAGACTTGGAGATGCCGGCTACAATCTCTTCAAGCTTGGTCGAACCAACAACCGTGGAGATGGTCTATTGACTGCTATACATAAAGAATGTCTAAGAGTTTTGGATTATCGAGAGTTGCTTTTCAACGATTGTGGCGATCGTGTTGCTCAATTGCTACACGTTCAGTCAGTTTCCCCCTCACAAAACCAAAAAGGAGGTGTTCCCCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCACGATTCAAGTCTTTGTTTAGTGAGATTGAATCAGGTTTACCAAATATTGCAGTATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATCATACTCTGTGGAGACTGGAATGGCAGCAAACGTGGGCATGTTTACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCGTATGATATTGCTAATGAATACAGTGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAATCAAGCACGTAAACCTTTGAAGACCAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAGGATCAGAAAATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGTTTCTCCGAAGCACTTCGTCAGGTAAAGTTAATTGGTGTGCCTTATGGACTATGCTTTCAACAATTACAAGATCTGTGGAATCATGCAGACGTGGATGGAAATGGTGTCATCGACTTTGAAGAGTTCAAGAAGATTTGGAATTCAGCATGTCCAAATCATGTGTTAGAAAGTGTGAAAGGGTGCATGGAAGATGGTAACACAGAATTGGAGCAGCAAGAAGCCATTGGTTTTATGATAAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTCTCTGATCATGCTAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCTGCCACACAAAACTGA 1413 0.4253 MVVAAGAKFNLRRGNSSSHNGINGYSGDAELSRISRGGRFTPVTEVERDPSCVSFTTFNILAPIYKRMDPQNQGLRESNCRSLWLPRNEMILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYNLFKLGRTNNRGDGLLTAIHKECLRVLDYRELLFNDCGDRVAQLLHVQSVSPSQNQKGGVPQEFLIVNTHLLFPHDSSLCLVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANEYSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKGSENDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLCFQQLQDLWNHADVDGNGVIDFEEFKKIWNSACPNHVLESVKGCMEDGNTELEQQEAIGFMIKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMRCSATQN 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02293 470 Pfam Endonuclease/Exonuclease/phosphatase family 86 276 IPR005135 GO:0003824
Viun10g02293 470 SUPERFAMILY DNase I-like 49 271 IPR036691 -
Viun10g02293 470 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 38 458 - -
Viun10g02293 470 Gene3D - 330 450 - -
Viun10g02293 470 SMART efh_1 369 397 IPR002048 GO:0005509
Viun10g02293 470 Gene3D Endonuclease/exonuclease/phosphatase 39 329 IPR036691 -
Viun10g02293 470 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Viun10g02293 470 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Viun10g02293 470 Pfam EF hand 370 396 IPR002048 GO:0005509
Viun10g02293 470 SUPERFAMILY EF-hand 347 394 IPR011992 -
Viun10g02293 470 FunFam Putative calcium-binding protein 39 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02293 Viun-Chr10 37499447 37502932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02293 118 466 EF-hand Containing Proteins AT1G02270 63.352 4.82e-165 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02293 - - gmx:100777138 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02293 10 37499447 37502932 Viun10g02293 10 37499447 37502932 ECH