Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02238 ATGTCTTTCACTGCAACCAAGTTCGCACCCTCTCCTCTCCCTCTCAATTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTCCGACCACTCCAAAACCAACCCTTCTTCCTCTTTTCTTGGATCCACTCGCAAGCTTCTTCGCTTCACTGCTCTTGCCAAGCCTCGTGCCCAAACCCGTGCTTCTACCCCTGTTGCTGATGTTCTTCTCCACCAAACCTCCAATCTGCTTATTACCAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATACTAGGGAGGTTCTTCGAGGACAAGTGTGCTGAGATGTATTACAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCAACTGGGTTCATCAAGCTTCTGAAGAAGGAGGATTATGTAGTGAGCACCTACAGAGACCATGTTCATGCATTGAGTAAGGGGGTTTCCTCTAGAGCTGTAATGAGTGAACTGTTTGGAAAGGCAACAGGATGCTGCAGAGGCCAGGGCGGTTCAATGCACATGTTCTCAAAAGAGCACAACATGCTCGGTGGTTTTGCATTCATTGGTGAAGGAATTCCGGTGGCCACTGGGGCTGCATTTTCGAGCAAGTACAGAAGGGAGGTGCTGAATGAGGCAGATGCTGATCAGGTGACACTGGCTTTCTTCGGAGATGGGACTTGTAACAATGGACAATTCTTTGAATGTCTGAACATGGCTGCTCTGTGGAAATTGCCAATTGTGTTTGTGGTGGAGAATAATTTGTGGGCTATTGGGATGTCTCATCTCAGAGCAACTTCAGATCCTCAGATATGGAAGAAAGGACCAGCGTTTGGAATGCCGGGGATTCATGTTGATGGAATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAGGAGGCAATTGAAAGGGCTAGAAGGGGAGAGGGACCAACCCTAGTGGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCTGACCCTGATGAGCTTCGTGACCCTGCTGAGAAGGAACACTATGCTGGTAGGGACCCCATCACTGCACTGAAACAATACCTTTTTGAGAACAATTTAGCCAGTGAGCAAGAATTGAAGGCCATAGAGAAGAAAATCGACGAGATTCTTGATGATGCAGTTGAGTTTGCAGACAATAGCCCTCTTCCACCACGTAGTCAGCTTCTGGAGAATGTGTTTGCTGATCCAAAAGGCTTTGGAATTGGTCCAGATGGAAGGTATAGATGTGAGGATCCAAAATTCACTGAAGGCACTGCTCAAGTCTAA 1296 0.473 MSFTATKFAPSPLPLNSTTPRSNDKPLSFSSDHSKTNPSSSFLGSTRKLLRFTALAKPRAQTRASTPVADVLLHQTSNLLITKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVSSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLNEADADQVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGIHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKQYLFENNLASEQELKAIEKKIDEILDDAVEFADNSPLPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02238 431 Gene3D - 52 412 - -
Viun10g02238 431 Coils Coil 362 389 - -
Viun10g02238 431 MobiDBLite consensus disorder prediction 1 42 - -
Viun10g02238 431 CDD TPP_E1_PDC_ADC_BCADC 89 387 - -
Viun10g02238 431 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 406 IPR029061 -
Viun10g02238 431 Pfam Dehydrogenase E1 component 93 393 IPR001017 GO:0016624
Viun10g02238 431 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 73 414 - -
Viun10g02238 431 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 83 404 IPR017597 GO:0004739|GO:0006086|GO:0043231
Viun10g02238 431 FunFam Pyruvate dehydrogenase E1 component subunit alpha 55 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02238 Viun-Chr10 37180555 37184002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02238 5 431 Acyl Lipid Metabolism Gene Families AT1G01090 77.982 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02238 K00161 - gmx:100811207 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02238 10 37180555 37184002 Viun10g02238 10 37180555 37184002 ECH