Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02237 ATGGAGCCTGACATCCGTTCACTCCTTAACTCTGCCTCCTCCTCCGCTTCTTCCTCCGACGCCGACGACGACGCTCCCCACCGCACCATCGATGAAATTCTCAACGACTGTGACACTTCTTCTTCCTCAACCTCTCCTCCTTCCTCTCCCTCTCACTCTCTCTCTCCACTCACCAATTCCCATCCTCAAAACCCCACTCTTCAACCAAAACCACTCCAACCTGCACTCGATTCAATTTCTCGGCTAAAACCACCCGAATTCTCCGACCGCACACGCGTTTCGCGTCCGTTCTCTTCTCTACTACAGGGCGTGCGGTCCAATGCGAAGCCGGGCGCCGCGCTCGCGGCTGCTGCTGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATTTCCAAGAGGAAATCTGCGGCCGCGATCAGCACTGAGTTGAGTTCGATCACTGCCGCTGGCGACGATTATTCCGATGTTTCTTCCAAAGGGGAATTGGGCGAGCTTAGCGAGAAATACGATCCTGTGCCGCTGAAAATCGAGACTCAGTCTAGTGAAAGTGCTTCTGTTAACGGCGAACGTGTTGAGAGTGATACAGATATTGTCATTGATTTGAAGGCTGGTAGTGCCGCTGACAATCAGGTGCATAGTGATACTGATAATGACAACGGGGATGGCGATGATGATGGAAATGGCAATTATAATGATTCTTCTATAGTGAGTGAGGAGAATAGGAATTTAGATGAGGTTGACGGTTACCATGGGAAGGATATGAATTCTTCAACGTTTGATGAAGATACTAAAGATCGTGACTTGGATGGCAATGATGGTGCTGATAAGAGAATCACAGCTACGGATTCAGCTGTGGAAACAGAAGAAACGGTGGATAATGGTGACAGCTCTGTGGATCATGTTAAAAATGAGATGAGTGGTGGCGGTAGTGACGAGGGTAGTTCATTGGGTGATGTTTCAGAGTTAGTGGAAGAGAGGCTTGAGGAATTGGAAAGCAGAAGGGCTGCTAAGAGAGCAGAGAAGAAACGAGAGTTTTCAATGAAACCACTTGAATTGGCTGAAAAACTTGAGAAAAAGCGAGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGACTCGAGGGCGTTAGGAGAGGGTCCACGACGTTGGGATACTTTGATGTTGATGCTGATAATGCAGTCACCAGGGCAATTTCGTCCCAAACATTCAGGCGCGAGCAAGGTTCTGCCCGAGCCTTGGCAGTTCATGCTAATTATATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGATAGCTCTGATGGAAAGATGTTGATGCTTGCTATACAAGGTGATCGGTTGCGTGCTCCGGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTTATCCTGTGGGATGTACAGAAAGGGGTTGTAGCAAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACCTTATTTCTAGGTCAAGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCCTGCACATTATCTCGGTTGTTCCTTTGTTTAGCAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACAGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGCGGAAGTGCTTCACCTTTTTCTCAGGGAAACACCTCAACCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGTGGAGATGCAGGTTGGAAACTCTTCAATGAATCCTCTTCTTTGTTGGAAGAAGGTGTGGTTGTATTTGTAACTCATCAAACTGCACTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCACAACTCTCTAGGCCAGATGGGGTTCGGGAGGGGTCCATGCCGTATACTGCATGGAAATACATGACACAAACACATAGTTCTACTGAAAATATGTCTGCAGAAGCTATTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGTAAGGTTCTGGTTGCAAAGTTGGTGAAATCAGAACTAAAAGTATATGGAAAGTGGTCTCTCGAAGGTGCGGCTATAGGTCTAGCATGGTTGGATGATCAGATGCTGGTAGTTCAAACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTATTGCCATAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATGTATTCGGAAATCCTGAAAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTTGGTCCAACACATCTTCTCATTTCTCGTCTTCTACCTTGGAAAGAGCGGATTTCTGTTTTGCGTAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCATGCTCATGGGGTTATTGATCTTCCTAGAACCTTGGATGCCGTACATGAGGCCATAATGCCCTTCTTAGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTACATTTCAGTGGCGTTTTGCAACCAAATAGGTAAAGTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAATGCATTGCGAGATAAAGGAGCAATACACCCGTGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATGTCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCCAAGTTCGTGGGTGTTCAACAGCGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGACATGCTTGGATCTCTACCTCCCGAGATCATGCAAGAATTGGTTGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCATATGGATATATCATCCTTGGATTTTAATCAGGTCGTCAGGTTATGCCGGGAGCATGGACTTTATAGTGCACTGGTTTATGTCTTCAATAAAGGATTAGACGATTTTAGGGCACCTCTCGAGGAGCTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGTGGGACTATTCCTCCCACACGCTTACCTTCTCTTAGAAGAGAACTTGTGGAGTTTTTGTTAAAGGACTCCTGTACTTCGAAATCTCAGACCATTTCAGACTTTGAGTCCAGAAGACCCCACCTGAATCTTTATCTTCTTTTAAAGTTAGACACTGAAGCTACCTTAGATGTCCTCAGATGTGCTTTTATGGAAGACGAAATTTCAAATGCCTGTTCATCTTCACCAGATTCAGTCAATAAACCTATAGAGGAAGCAAAAAAAGAAGATAAAGCTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCACTCATTCAAATAATTGATATGAATATTGTTCAGACAGATACAACCTTTAGTAGTGGTGAAGATGGGTTGATAAAAGAGTGGCCTTCGAAGGACATAGGTTATCTATTTGAGTTCATTGCATATTATGTTGCTATCCAAAGAGCTAAAATTTCAAAGGATGTACTGTGTCAAATATTGGAATATTTGACATCTGATAGTCACTCCTCTACCAATATTTCTGTTCATTGCTCAACTCCAAAAAACAGAGAGAAGCAAGTGCTAGCACTTTTGGAAGTACTTCCTAAGTCAGACTGGGATCCATCATTTGTGTTAGATCTATGTGAAAGAGCCAAATATCATCAGGTTTGTGGATTGATCCATAGTTTCAGACATGAATACGTGGCTGCACTGGATAGTTATATGAAAGATGTAGACGAGCCTATTCATACCTTTTCCTTTATTAATAAAACATTATCACACTTGACTGACAATGAGCATGTAGCATTTCGGTCCGCAGTCATATTGCGAATTCCTGAATTGGTTGAACTAAGCAGGGAGGGTGCATTCCATGTGGTTCTCGGTCATTTTAGTGAAGAAAGTTCCCATATCATAACTGAACTTCACTCTCATCCAAGAAGTCTTTTTCTTTATTTGAAGACGCTCATTGAGTTTCACTTATTTGGCACCCTAGACTTGTCTAATTTGAGCAAGGATGACACTATGAATCCTCTTAATGGGAGGCAGGTTAAGGATCACTCTGAAGGAGTTAGAGATTACTTAGAGAATATATCCAAGTTCCCCAAGTTCATGCGGGAAAAACCTATTCACGTGCCTGATGATCTTATTGAGCTTTACCTTGAGTTACTATGCCGGTACGAAGGTAGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGTCTCTGTCAAGAATATGGCATTATAGATGCAACTGCGTTCTTACTAGAAAGGGTTGGTGATGTTGGTAAAGCTCTTTCAATTACACTTTCTGATCTAAATGATAAATTCGTTAAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCATAGCAGAGTTGGTTCTTCACATGTGGAAGTATTCGACAGTGTTTTAAGAACAAAAGAGGGAAGTGACATCCACGATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAAGCGCATTGGTTTAAATTACTTGATTCGTTTTGTGACCCATTGATCGATTCAAATGTTGAAGGAGCATATGAAAGTAAAAATCATTTTGGAATGTTAGCTGGATCAGCAGATTCACAACAGGACAAGGACGCCTATAAAAGCAGCTGGAAAATTTCAAAGTCCCGGAATGGTCATATCTTGAGAAAATTGCTATCACAGTTCATTAAAGAGATTGTAGAGGGAATGATTGGTTTTGTTCACCTTCCAACAATCATGTCTAAACTTCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTCGAAAGAAGAATTCTGGATGCTGCCAAATCGTTGATAGAAGATGACTCATTCTATACAATGAGTTTACTCAAGAAAGGGGCCTCCCATGGATATGCCCCCAGGAGTCTCGTGTGCTGTATTTGTAATTGCCTTCTTACAAAGAACTCTGGTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAATTGAGGCATCAAGCAGAGGATCTTCGTCGGGATGCCCTCTGTGCGTGCCTAACAAGAAATCCCAGCAGTCCCGAAACAAATCAATCATTGCAACGAATGGCTTGGTCAACAAATTCTCATCGAAGCGCCAGTACCCCCATGGAAGTTCCCTCCATCCTCATGACAGTGATTTGACAGAGAATATGTATGGACAACAACAGATATCACGGTTTGAGATCTTGAGCAACCTGCAGAAAAATCAGAGGTTTATGCAAATAGAAAACTTGCCTCCGTTGAAGCTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAGTAAAGTTGCAAACTTTCTGACAGGCGAAAGTAGCAATAATTCTTCTGCTATTGAGAAACAAAGTAGAAACAAGCAAAACCGGGAGCTAAGAGTTAAGGGTTCATCAATCCGATTTCCTTTAAAGTCAAGTATATTTGGCAAGGAGAAGACAAATAAGCGGTGA 5751 0.4288 MEPDIRSLLNSASSSASSSDADDDAPHRTIDEILNDCDTSSSSTSPPSSPSHSLSPLTNSHPQNPTLQPKPLQPALDSISRLKPPEFSDRTRVSRPFSSLLQGVRSNAKPGAALAAAAAASRSVPTPHAAAIISKRKSAAAISTELSSITAAGDDYSDVSSKGELGELSEKYDPVPLKIETQSSESASVNGERVESDTDIVIDLKAGSAADNQVHSDTDNDNGDGDDDGNGNYNDSSIVSEENRNLDEVDGYHGKDMNSSTFDEDTKDRDLDGNDGADKRITATDSAVETEETVDNGDSSVDHVKNEMSGGGSDEGSSLGDVSELVEERLEELESRRAAKRAEKKREFSMKPLELAEKLEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSARALAVHANYIAVGMSKGLIVVFPSKYSIHHADSSDGKMLMLAIQGDRLRAPVTSMSFNQQGDLLLAGYGDGHLILWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTSTPASSISSMMGVVGGDAGWKLFNESSSLLEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTHSSTENMSAEAIERVSLLAIAWERKVLVAKLVKSELKVYGKWSLEGAAIGLAWLDDQMLVVQTSSGQLYLFSKDGTVIHQTSIAIDGIGGDDLVSYHTHFINVFGNPEKAYHNSVAVRGASIYILGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDQSNDSNSRSNSMHCEIKEQYTRVGGVAVEFCCHVKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSCTSKSQTISDFESRRPHLNLYLLLKLDTEATLDVLRCAFMEDEISNACSSSPDSVNKPIEEAKKEDKATETQNALVQNTVDALIQIIDMNIVQTDTTFSSGEDGLIKEWPSKDIGYLFEFIAYYVAIQRAKISKDVLCQILEYLTSDSHSSTNISVHCSTPKNREKQVLALLEVLPKSDWDPSFVLDLCERAKYHQVCGLIHSFRHEYVAALDSYMKDVDEPIHTFSFINKTLSHLTDNEHVAFRSAVILRIPELVELSREGAFHVVLGHFSEESSHIITELHSHPRSLFLYLKTLIEFHLFGTLDLSNLSKDDTMNPLNGRQVKDHSEGVRDYLENISKFPKFMREKPIHVPDDLIELYLELLCRYEGSSVLKFLEMFDSYRVEHCLRLCQEYGIIDATAFLLERVGDVGKALSITLSDLNDKFVKLDAAVEAVVLNHSRVGSSHVEVFDSVLRTKEGSDIHDLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLIDSNVEGAYESKNHFGMLAGSADSQQDKDAYKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCICNCLLTKNSGSSGIRIFNCGHAIHLQCEVSEIEASSRGSSSGCPLCVPNKKSQQSRNKSIIATNGLVNKFSSKRQYPHGSSLHPHDSDLTENMYGQQQISRFEILSNLQKNQRFMQIENLPPLKLAPPAVYHEKVSKVANFLTGESSNNSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR 1916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02237 1916 MobiDBLite consensus disorder prediction 153 324 - -
Viun10g02237 1916 MobiDBLite consensus disorder prediction 241 286 - -
Viun10g02237 1916 SUPERFAMILY WD40 repeat-like 410 753 IPR036322 GO:0005515
Viun10g02237 1916 PANTHER VACUOLAR PROTEIN SORTING VPS41 215 1846 IPR045111 GO:0006623
Viun10g02237 1916 Pfam Golgi CORVET complex core vacuolar protein 8 943 1127 IPR025941 -
Viun10g02237 1916 SUPERFAMILY RING/U-box 1718 1773 - -
Viun10g02237 1916 MobiDBLite consensus disorder prediction 1 98 - -
Viun10g02237 1916 Coils Coil 323 343 - -
Viun10g02237 1916 CDD RING-H2 1725 1773 - -
Viun10g02237 1916 SMART WD40_4 454 495 IPR001680 GO:0005515
Viun10g02237 1916 SMART WD40_4 404 441 IPR001680 GO:0005515
Viun10g02237 1916 MobiDBLite consensus disorder prediction 160 174 - -
Viun10g02237 1916 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Viun10g02237 1916 Gene3D - 385 544 IPR015943 GO:0005515
Viun10g02237 1916 MobiDBLite consensus disorder prediction 1870 1896 - -
Viun10g02237 1916 MobiDBLite consensus disorder prediction 179 193 - -
Viun10g02237 1916 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 504 IPR001680 GO:0005515
Viun10g02237 1916 MobiDBLite consensus disorder prediction 35 73 - -
Viun10g02237 1916 ProSiteProfiles Zinc finger RING-type profile. 1725 1773 IPR001841 -
Viun10g02237 1916 Pfam Region in Clathrin and VPS 1444 1512 IPR000547 GO:0006886|GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02237 K20178 - gmx:100780869 3135.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02237 10 37158453 37172625 Viun10g02237 10 37158453 37172625 ECH