Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02173 ATGCCGCCCCAAATGCAGCCCTTCGCCGATTTCCTCCGCCCCGCGCCAGACAGCGGCGAGGGGCGGACCCCACCGCTGAACCGAACCGTGAAGAAGACGCTGGTAGTAGAAGAGTCCTCCTTGGACAATCCGGATCTGGGCCCGTTCCTTCTGAAGATGGCCCGAGAAACGATAGCGTCCGGTGAGAGCCCGGTGAAGGCCCTGGACTTCGCCATTCGGGCCTCCAAGTCCTTCGAACGGTGTGCAGGCCCGGGCCTGGAGCTCGCCACGTGTCTCCACGTGGTTGCTGCGATACACAGCAGTTTGGGGCGGTTGGATGAGGCGGTTGAGGCTCTGGAACGGTCCATTTTGTTGCTGGAAGGGGAAAACGAGTCGGGTCATGCCATGGCCCAGTTTTCCGGGTACATGCAACTTGGTGACACGTATTCCATGATTGGACAGTTGGATAGGGCCATTTCGTGTTACGAGTCGGGTTTGAAGATCCAAATGGATGTTCTGGGTGAGTCCGACCCGAGAATCGCTGAGACTTGTAGGTACTTAGCTGAAGCTCATGTCCAAGCCATGCAATTTGAGCAGGCAGAGAAGTTCTGCAAGAAGACCCTCGAAATTCACAGGGAGCATTGCTCTCCTGCATCTCTTACAGAAGCAACAGACAGGCGTCTAATGGCACTTATATGTGAGGCCAAGGGAGATTATGAACCAGCACTGGAACACCTTGTCCTAGCTAGCATGTCAATGATCGCCAATGCACAAGAAAACGAGGTTGCAGCAATTGATGTTAGCATCGGAGACATTTACATGTCACTCTGTCGTTTTGATGAGGCTGTTTTCGCGTATCAGAAAGCACTAACAGTGTTCAAATCCACCAAAGGTGAAAACCACAGTTCTGTGGCGTTAGTCTTCATTCGCCTTGCAGACCTTTACTACAGAACAGGAAAACTAAGAGAGTCAAAATCATATTGTGAAAATGCCTTGAGAATATACAGTAAGCCTGTGGCTGGAACAACGGCTGGGGAGATTGCAAGTGGGTTGACTGAAATCTCTGGCATCTATGAAGCTCTAAATGAGCCTGAGGAGGCACTGAAGCTGCTGCAGAAGGCAGTGAAATTGTTGCAGGATATCCCTGGACAGTATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTACATGGTTGGGAGATACATGGAGGCATGGAAGTCTTTTGAGAATGCCATCACCAAGCTGAGAGCAAGTGGGGAGAAAAAAGGTACCTTTTTTGGAGTTGTGTTGAACCAGATGGGTCTGGCATGTGTGCAACTGTATAAAATAGGGGATGCTGCCAAACATTTTGAAGAAGCAAGAACGATATTGGAGAGGGAGTGTGGTACATATCATTCTGACACTCTTGGAGTGTATAGCAATCTTGCAGCAACTTATGATGCCTTGGGAAGAGTTGAAGAGGCCATTGAGATATTGGAATACATACTGAAGATGAGAGAAGAAAAACTTGGAACTGCGAATCCAGATGTTGATGATGAAAAGAAGCGATTATTTGAGCTTTTGAAAGAAGCAGGAAGAGTTCGGAATAGAAAGGGAAAAAAATCTCTTGAAAACCTTATAGATTCCAATTCCTTGAAGATGAAGAAGGAAGGGAAAAAGAGATGGTCTGCTTTTGGCTTCAGAACTTAA 1680 0.4833 MPPQMQPFADFLRPAPDSGEGRTPPLNRTVKKTLVVEESSLDNPDLGPFLLKMARETIASGESPVKALDFAIRASKSFERCAGPGLELATCLHVVAAIHSSLGRLDEAVEALERSILLLEGENESGHAMAQFSGYMQLGDTYSMIGQLDRAISCYESGLKIQMDVLGESDPRIAETCRYLAEAHVQAMQFEQAEKFCKKTLEIHREHCSPASLTEATDRRLMALICEAKGDYEPALEHLVLASMSMIANAQENEVAAIDVSIGDIYMSLCRFDEAVFAYQKALTVFKSTKGENHSSVALVFIRLADLYYRTGKLRESKSYCENALRIYSKPVAGTTAGEIASGLTEISGIYEALNEPEEALKLLQKAVKLLQDIPGQYRTVAGIEAQMGVMFYMVGRYMEAWKSFENAITKLRASGEKKGTFFGVVLNQMGLACVQLYKIGDAAKHFEEARTILERECGTYHSDTLGVYSNLAATYDALGRVEEAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRNRKGKKSLENLIDSNSLKMKKEGKKRWSAFGFRT 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02173 559 ProSiteProfiles TPR repeat profile. 466 499 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 424 457 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 466 499 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 132 165 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 174 207 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 256 289 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 89 122 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 382 415 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 298 331 IPR019734 GO:0005515
Viun10g02173 559 SMART tpr_5 341 374 IPR019734 GO:0005515
Viun10g02173 559 SUPERFAMILY TPR-like 387 518 IPR011990 GO:0005515
Viun10g02173 559 MobiDBLite consensus disorder prediction 1 27 - -
Viun10g02173 559 SUPERFAMILY TPR-like 66 161 IPR011990 GO:0005515
Viun10g02173 559 Gene3D Tetratricopeptide repeat domain 242 420 IPR011990 GO:0005515
Viun10g02173 559 Gene3D Tetratricopeptide repeat domain 85 241 IPR011990 GO:0005515
Viun10g02173 559 ProSiteProfiles TPR repeat profile. 132 165 IPR019734 GO:0005515
Viun10g02173 559 ProSiteProfiles TPR repeat profile. 256 289 IPR019734 GO:0005515
Viun10g02173 559 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 32 541 - -
Viun10g02173 559 Pfam Tetratricopeptide repeat 255 329 - -
Viun10g02173 559 Pfam Tetratricopeptide repeat 426 498 - -
Viun10g02173 559 Coils Coil 102 122 - -
Viun10g02173 559 Gene3D Tetratricopeptide repeat domain 424 526 IPR011990 GO:0005515
Viun10g02173 559 SUPERFAMILY TPR-like 221 329 IPR011990 GO:0005515
Viun10g02173 559 Pfam MalT-like TPR region 94 240 IPR041617 -
Viun10g02173 559 SUPERFAMILY TPR-like 135 496 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02173 Viun-Chr10 36561724 36566275 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02173 - - gmx:100794697 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02173 10 36561724 36566275 Viun10g02173 10 36561724 36566275 ECH