Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02157 ATGTCTATTCTCACGCGTGTTACCCGCCAAAATCCCTCCACCGCCACCCTCCTCACGCGCCACCTCTCCTCCGCAGCCTCCAAACTCCACTCTTCATACACTTTCAAACCACCGTCGTCTCTCACTCCCGAGCCGCAATGCCCCAATTCCCCTCCCACCAAGCCCAACCAAAAGAAATCCAAGCCCAAGTACCGGCCTCCCTCCTCCCTCGACCCGGCCGGCCGCAAGCCGGTTCGTTCCAATGACCTGCCATTCGATTTCCGGTTCAGCTACACGGAGAGCAGCCCAAAGGTGCGGCCCATCGGGCTCAGGGAGCCCAAGTATTCTCCCTTTGGGCCGGGCCGGCTCGACCGGAAATGGACCGGGGTGTGTGCGCCAGCCGTGGACCCCACTGTGGAGAGCTTAGAGGGTCCGGAGGACCCCAAGTTGGAGGAACAGAGGAAAATGAAGAGAGAGATGATTCAAGGGAAACCCCTTAACAGTGATGAGAGAAAGGCATTGATATCGCAATTTGAGAGAAGCAAAACTAATAGGCATGTCAATCTCGGAAGGGATGGTTTAACTCACAACATGCTGAATGTTATTCATAATCATTGGAAATTTGCTGAAGCGGTCAGAATCAAATGCATGGGTGTTCCAACAATGGACATGAAAAATATTTGTACCCAGCTTGAGGACAAAACATTTGGGAAGGTCATCTTCAGACATGGGGGTACACTTATATTATACAGAGGCAGGAATTATATTCCTAAAAAGAGATCTATTGTTCCTCTCATGTTGTGGAAGCCCCATGAACCTGTATATCCCAGATTGATCAAGACAACAATTGATGGCTTAAGTATTCAGGAAACCAAAGAAATGCGGAAGAGGGGACTAGCTGTTCCTGCTTTAACTAAGCTTGCCAAAAATGGTTATTATGCTTTTTTGGTACCCATGGTCAGAGATGCTTTCCTCTCATGCGAATTGGTTCGGATAGACTGTGAGGGGCTTGAAAGGAAAGATTACAAGAAAATAGGCTGCAAACTCAGGGACATGGTCCCCTGTATTCTGGTGACTTTTGAGAATGAACAAGTTGTGGTTTGGAGGGGGAAGGATTATAAGCCTTCAAAGGATGGATACTTTCTTAAAGATAGAGAATCATTTGATGACGACAATGATGACTTAAATGTGGCAGAGGAGCAACAGGCTATTTAA 1194 0.4807 MSILTRVTRQNPSTATLLTRHLSSAASKLHSSYTFKPPSSLTPEPQCPNSPPTKPNQKKSKPKYRPPSSLDPAGRKPVRSNDLPFDFRFSYTESSPKVRPIGLREPKYSPFGPGRLDRKWTGVCAPAVDPTVESLEGPEDPKLEEQRKMKREMIQGKPLNSDERKALISQFERSKTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMKNICTQLEDKTFGKVIFRHGGTLILYRGRNYIPKKRSIVPLMLWKPHEPVYPRLIKTTIDGLSIQETKEMRKRGLAVPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFENEQVVVWRGKDYKPSKDGYFLKDRESFDDDNDDLNVAEEQQAI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02157 397 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 10 370 IPR044599 GO:0000373
Viun10g02157 397 SUPERFAMILY YhbY-like 279 368 IPR035920 -
Viun10g02157 397 FunFam CRS2-associated factor 1, chloroplastic 158 254 - -
Viun10g02157 397 SUPERFAMILY YhbY-like 158 253 IPR035920 -
Viun10g02157 397 FunFam CRS2-associated factor 1, chloroplastic 278 372 - -
Viun10g02157 397 Gene3D - 279 373 IPR035920 -
Viun10g02157 397 SMART CRS1_YhbY_2 159 244 IPR001890 GO:0003723
Viun10g02157 397 SMART CRS1_YhbY_2 279 362 IPR001890 GO:0003723
Viun10g02157 397 Pfam CRS1 / YhbY (CRM) domain 159 244 IPR001890 GO:0003723
Viun10g02157 397 Pfam CRS1 / YhbY (CRM) domain 281 362 IPR001890 GO:0003723
Viun10g02157 397 MobiDBLite consensus disorder prediction 27 81 - -
Viun10g02157 397 Gene3D - 158 255 IPR035920 -
Viun10g02157 397 ProSiteProfiles CRM domain profile. 157 255 IPR001890 GO:0003723
Viun10g02157 397 ProSiteProfiles CRM domain profile. 277 373 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02157 Viun-Chr10 36382003 36386970 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02157 - - gmx:100789954 737.643