Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02119 ATGGGTTCGGAGAATGTGAAGACTGGGGAATCCGCCGTCACCACCATCGTCAACCTCGCCGAGGAGGCCAAGCTCGCACGAGAAGGCGTAGTCAAGGCTCCCAACTACGCGCTCGCCAGCATCTGCAAGTCACTCGTCGCGGGAGGCGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCTCCTCTGGAACGGTTGAAAATTTTGCTACAGGTCCAAAACCCTCATAACATTAAGTACAATGGAACTATACAAGGCCTAAAATATATATGGAGAACTGAAGGTCTCCGTGGACTTTTCAAAGGGAATGGTACTAACTGTGCTCGAATTGTCCCTAACTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGTACATGTATCAGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTGTCTTACGTCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGACATGGTTCGTGGCCGGATTACTGTGCAGACTGAGGCATCCCCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACTGTGCTTAGGGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTGTATGAGTCTCTAAAAGATTGGTTAGTTAAATCTAACGCATTTGGTCTTGCTGATAATTCTGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGACGTTATTCGTAGAAGAATGCAGATGGTTGGTTGGAACCATGCTGCTTCTGTTCTAACTGGTGATGGAAGAGGCAAAGTGCCACTTGAATACACTGGAATGGTTGATGCATTCAGGAAAACTGTTCAGCATGAAGGATTCGGTGCATTATACAAGGGTCTTGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCAATCGCTTTTGTGACATACGAGATGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCTGACTGA 1068 0.4644 MGSENVKTGESAVTTIVNLAEEAKLAREGVVKAPNYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLVKSNAFGLADNSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRGKVPLEYTGMVDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEIRISD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02119 355 Gene3D Mitochondrial carrier domain 37 349 IPR023395 -
Viun10g02119 355 Pfam Mitochondrial carrier protein 40 126 IPR018108 -
Viun10g02119 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Viun10g02119 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Viun10g02119 355 PANTHER SOLUTE CARRIER FAMILY 25 39 349 - -
Viun10g02119 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Viun10g02119 355 SUPERFAMILY Mitochondrial carrier 40 342 IPR023395 -
Viun10g02119 355 FunFam Mitochondrial substrate carrier 37 349 - -
Viun10g02119 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Viun10g02119 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Viun10g02119 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Viun10g02119 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Viun10g02119 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Viun10g02119 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Viun10g02119 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Viun10g02119 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02119 Viun-Chr10 36004121 36008736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02119 16 350 EF-hand Containing Proteins AT5G51050 37.758 3.27e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02119 K14684 - gmx:100814032 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02119 10 36004121 36008736 Viun10g02119 10 36004121 36008736 ECH
Viun6g01754 6 24897629 24902792 Viun10g02119 10 36004121 36008736 PCT