Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01920 ATGGCGACAGCAAGACGAAACTTCCCGTCGATAACAGAATGCAACGGGACCAAGTCGTCGCCGGAGTCCGTTGCCGCTGACCTCGACGGCACGCTCCTCATCTCCCGCAGCTCATTCCCGTACTTCATGATGGTCGCCGTCGAAGCCGGCAGCCTCCTCCGCGGCTTCATCCTCCTCCTCGCCGTTCCGCTCATCATCTTCGCGTACCTCTTCATATCTGAATCCCTCGGCATCCAGATCCTCATCTACATCTCCTACTCCGGACTCAAGATCCGTGACATCGAACTCGTCTCGCGTGCGGTCCTCCCTAGGTTTTATGCTGCGGACGTGAGAAAGGAGAGCTTCGAGATGTTCGACCGGTGCAAGAGGAAGGTCGTGGTGACGGCGAATCCAACGGTGATGGTGGAGCCGTTCGTGAAGGACTTTCTTGGTGGAGACAAGGTGCTGGGAACGGAGATCGAAGTGAATCCGAAGACGAAGAAGGCTACCGGATTCGTGAAGAAGCCTGGTGTGCTCGTCGGAAAGTGGAAGCGTCTTGCGGTTGCAAAAGAGTTTGGCGAGGAGTCGCCGGATATTGGACTCGGAGATCGTAAAACTGACTTCGATTTCATGTCCATTTGCAAGGAAGGTTACATGGTGCCTCCGAGCAAATCAGCAAAACCAGTCCCACAGGAGCGACTGAAGAGCAGGCTCATCTTCCACGACGGTCGTTTCGTGCAGAAGCCAGACCCACTCAACGCTCTCATCACCTTCCTATGGCTTCCCTTTGGTTTTATCCTCTCCATTATACGGGTCTACTTCAACCTTCCCCTCCCCGAACGCATCGTGCGCTACACCTACGAAATGCTCGGCATCAAGCTCGTCATCCGCGGCCACCGCCCTCCACCACCGTCTCCTGGCACCCCCGGCAACCTCTACGTCTGCAACCACCGCACCGCCCTTGACCCCATCGTGATCGCCATCGCCCTCGGCCGCAAGGTCTCCTGCGTCACCTACAGCGTCAGCAAGCTCTCCCGCTTCCTTTCGCCCATCCCCGCCGTCGCCCTCACTCGCGACCGCGCCGCCGACGCCGCCCGCATCACCGAGATCCTCCAGAAGGGTGACCTGGTGGTCTGCCCCGAAGGCACCACGTGTCGCGAGCCCTTTTTGCTTCGGTTCAGCGCCCTCTTCGCCGAACTGAGCGACAGAATCGTTCCCGTGGCTGTGGACTGCAAGCAGAGCATGTTCTTTGGAACGACTGTTCGTGGTATAAAATTCTGGGACCCTTACTTCTTCTTCATGAACCCTAGGCCAGTTTACGAGGTTACCTTCCTGGACCCGTTGCCGGAGGAGATGTCGGTGAAGGCAGGGGGGAAGAGCTCAATTGAGGTGGCGAATCATGTGCAGAAGGTGTTGGGGGATGTGTTAGGGTTCGAGTGCACGGGGTTGACTAGGAAGGATAAGTATATGCTGTTGGGTGGGAATGATGGGAAGGTGGAGTCTCTGTATGGTTCCAAGAAGTGA 1503 0.5715 MATARRNFPSITECNGTKSSPESVAADLDGTLLISRSSFPYFMMVAVEAGSLLRGFILLLAVPLIIFAYLFISESLGIQILIYISYSGLKIRDIELVSRAVLPRFYAADVRKESFEMFDRCKRKVVVTANPTVMVEPFVKDFLGGDKVLGTEIEVNPKTKKATGFVKKPGVLVGKWKRLAVAKEFGEESPDIGLGDRKTDFDFMSICKEGYMVPPSKSAKPVPQERLKSRLIFHDGRFVQKPDPLNALITFLWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIKLVIRGHRPPPPSPGTPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAVALTRDRAADAARITEILQKGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAVDCKQSMFFGTTVRGIKFWDPYFFFMNPRPVYEVTFLDPLPEEMSVKAGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVESLYGSKK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01920 500 CDD LPLAT 280 441 - -
Viun10g01920 500 FunFam Glycerol-3-phosphate 2-O-acyltransferase 6 106 225 - -
Viun10g01920 500 Pfam Acyltransferase 303 393 IPR002123 GO:0016746
Viun10g01920 500 PANTHER ANCIENT UBIQUITOUS PROTEIN 22 494 - -
Viun10g01920 500 SMART plsc_2 304 405 IPR002123 GO:0016746
Viun10g01920 500 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 219 490 - -
Viun10g01920 500 Pfam haloacid dehalogenase-like hydrolase 25 204 - -
Viun10g01920 500 SUPERFAMILY HAD-like 23 216 IPR036412 -
Viun10g01920 500 Gene3D - 100 228 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01920 Viun-Chr10 33900530 33904429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01920 6 500 Acyl Lipid Metabolism Gene Families AT4G00400 79.192 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01920 K13508 - gmx:100794137 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01920 10 33900530 33904429 Viun10g01920 10 33900530 33904429 ECH