Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01890 ATGGAGAATGTAGATGATGGAAAAGAATCATCAAATAGTGTGAATAAAGTAGAAGACAGCAATTCTGTACTTATCTGTGGCCTTCCAGATGATATATCTCTAATGTGTCTGGCAAGAGTTCCTAGAAAATATCATCCAGTCCTGAAGTGTGTCTCAAAGAGATGGAGGGACTTAATTTGCAACGAAGAGTGGTGCACTTACCGTCGGAAGCACAAACTGGAAGAGACCTGGATTTATGCTCTGTGCAGGGACAAATTGAATGAGACTTTCTGTTATGTTTTGGATCCAACCGCCTCACTAAGATATTGGAAGCTGGTTGATGGTATTCCTCCTCAGGCCTCAAAAAGAAAAGGCATGGGTTTTGAAGCTTTGGGAAATAAGCTATTCTTGTTGGGTGGTTGTAGCTGGTCAATAGATTGTACTGATGAGGTTTATTCATATGATGCTTGCTCAAACTGTTGGGTTCAAGCTACTTCCATGTCAACTGCTAGGTGTTTCTTTGCTTGTGAAGTTTTGGATGAAAAACTATATGCTATTGGAGGATTAGCTTCAAATCCAACCTATTCTCATTCTTGGGATACTTTTGACCCTCTGACAAATTGTTGGAGATCTCAGAGAGACATTGCTATTTTTTCTGATGTTGAAGATTCAGTAGTTCTTGGTGGGAAGATATACGTCCGATTTTCCAGATACCCTGTAACTCCTCATGTGTTTGCCATAGTATATGAACCATCAAGTGACACATGGCAGTATGCAGATGCAGACATGGTTTCAGGGTGGACAGGCCCTGCAGTTGTTGTGGATGACACCCTTTATGTCTTGGATCAAACTTTAGGAACTAGGCTAATGATGTGGCACAAAGAGAAACGCCAGTGGATACTGGTTGGAAAACTATCACCACTGCTTACTAGACCACCCTGTCAGCTTGTTGCAGTTGGTAGAAGCATTTTCATTGTTGGGAAAATGCTTAGCACTGTGGTTGTTGATGTTGGTAATTTGGGGAATGAGGTGTTGATGAGTTCTTCCATACCAGGATTGTTATCTGATTTCACTGTAATAAGTTGTAAATGCCTATCAATCTGA 1083 0.41 MENVDDGKESSNSVNKVEDSNSVLICGLPDDISLMCLARVPRKYHPVLKCVSKRWRDLICNEEWCTYRRKHKLEETWIYALCRDKLNETFCYVLDPTASLRYWKLVDGIPPQASKRKGMGFEALGNKLFLLGGCSWSIDCTDEVYSYDACSNCWVQATSMSTARCFFACEVLDEKLYAIGGLASNPTYSHSWDTFDPLTNCWRSQRDIAIFSDVEDSVVLGGKIYVRFSRYPVTPHVFAIVYEPSSDTWQYADADMVSGWTGPAVVVDDTLYVLDQTLGTRLMMWHKEKRQWILVGKLSPLLTRPPCQLVAVGRSIFIVGKMLSTVVVDVGNLGNEVLMSSSIPGLLSDFTVISCKCLSI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01890 360 Pfam Kelch motif 116 161 IPR006652 GO:0005515
Viun10g01890 360 Pfam Kelch motif 163 204 IPR006652 GO:0005515
Viun10g01890 360 SMART kelc_smart 175 221 IPR006652 GO:0005515
Viun10g01890 360 SMART kelc_smart 127 174 IPR006652 GO:0005515
Viun10g01890 360 PANTHER OS02G0202900 PROTEIN 8 333 IPR045887 -
Viun10g01890 360 SMART fbox_2 28 68 IPR001810 GO:0005515
Viun10g01890 360 Gene3D - 70 338 IPR015915 GO:0005515
Viun10g01890 360 SUPERFAMILY Kelch motif 89 323 IPR015915 GO:0005515
Viun10g01890 360 CDD F-box_AtAFR-like 24 68 - -
Viun10g01890 360 SUPERFAMILY F-box domain 25 64 IPR036047 GO:0005515
Viun10g01890 360 Pfam F-box domain 26 61 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01890 Viun-Chr10 33680032 33683028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01890 28 303 Miscellaneous Gene Families AT4G33900 27.575 6.30e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01890 - - pvu:PHAVU_010G098100g 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01890 10 33680032 33683028 Viun10g01890 10 33680032 33683028 ECH