Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01884 ATGCAAGCACTGTGTTCAGATTGCACCCTTCAGGTGCCCAGGTTCTCGATTACTGCAAATCCTCCAAAGTTTGCATCTTTTGTGTCCACCCTGAGCCCCTCCAAGGCTGGAACTAGGTTGTGTTTGACTTTTGGTGGTGGGAGTTACAAACCCATTAGGAGGAGTCGGTGGAATGGGTTTGGGGTGCAGTGTGCATCCTCCGATGGAGAAAGTGATGATGGGTTTTACATGAGAAGATGTGTGGAGCTTGCAAGAAAGGCTATTGGGTATACCAGCCCCAATCCATTGGTGGGGTGTGTTATTGTAAAGAATGGGATAGTTGTTGGTGAAGGGTTCCACCCTAAAGCAGGGCAACCGCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCACAAAATGCAACTGCTTATGTGAGCTTGGAACCTTGTAATCATTTTGGTAGGACTCCACCTTGTACTGAAGCTCTAATTGAAGCTAAAGTGAAAAAGGTTGTTGTGGGGATGGTGGATCCAAATCCCATAGTTGCCTTCAAAGGGGTGGAAAGATTGAGAGATGCAGGAATTGAAGTTGTTGTGGGTGTAGAGGAAGAGTTGTGCAAGAGTCTCAATGAGCCTTACATTCATCGCATGTTGACGGGAAAACCTTTCCTTACTTTGAGATATTCTCTTTCTGTCAATGGAAATTTTTTGAACTTGCTTGGGAATGGAGCTGCAGAATGTGGTGGTTACTATTCAAGGCTATTACAGGAATATGATGCAGTGGTAATGTCTTCTTCCTTTTTCACTGAAAACTTTAAAGTACCTGCATCTCAAGAACCTGGAGCCAACCAACCAATTCGGATTGTAATACATAAAGATCCTAGTTCTTTGAATCAAATTCTATCATCCATCAATGACATCACAAGCAAAATCATAATCTTCACTGAGAATAAAGCAGGAACAGCTCCAGAAGTGGCTCAACAAGGAATTGAAACTGTAGTTCTGGATCAAATAAATCTGGATGTGATCTTGGATTATTGTAATAATCAAGGATTGTGCAGTGTTCTGTTAGATATTAGAGGTAGTTTCAGTGAGTTTGAAGTGCTTGTTATGGAGGCTATTGAGAATAACTATATTAATAAATTTATCACAGAAATTTTGCCTGTTTGGAACAAACGTACTGAGCCAGATCCTCTACAGACATTGAAGAGCTTAGACCAAGGAATGAAAGTGCTAAACCTGAAGTCCAAGGCCTCTGATCAGAGTGTTGTAATTGAGGGATATTTTAAGTCTGAGTAA 1284 0.4182 MQALCSDCTLQVPRFSITANPPKFASFVSTLSPSKAGTRLCLTFGGGSYKPIRRSRWNGFGVQCASSDGESDDGFYMRRCVELARKAIGYTSPNPLVGCVIVKNGIVVGEGFHPKAGQPHAEVFALRDAGDLAQNATAYVSLEPCNHFGRTPPCTEALIEAKVKKVVVGMVDPNPIVAFKGVERLRDAGIEVVVGVEEELCKSLNEPYIHRMLTGKPFLTLRYSLSVNGNFLNLLGNGAAECGGYYSRLLQEYDAVVMSSSFFTENFKVPASQEPGANQPIRIVIHKDPSSLNQILSSINDITSKIIIFTENKAGTAPEVAQQGIETVVLDQINLDVILDYCNNQGLCSVLLDIRGSFSEFEVLVMEAIENNYINKFITEILPVWNKRTEPDPLQTLKSLDQGMKVLNLKSKASDQSVVIEGYFKSE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01884 427 FunFam Riboflavin biosynthesis protein RibD 70 210 - -
Viun10g01884 427 SUPERFAMILY Dihydrofolate reductase-like 244 423 IPR024072 -
Viun10g01884 427 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 77 387 IPR004794 GO:0008835|GO:0009231
Viun10g01884 427 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 73 170 IPR002125 -
Viun10g01884 427 SUPERFAMILY Cytidine deaminase-like 73 212 IPR016193 GO:0003824
Viun10g01884 427 CDD Riboflavin_deaminase-reductase 77 189 - -
Viun10g01884 427 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 120 158 IPR016192 GO:0008270|GO:0016787
Viun10g01884 427 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 66 230 - -
Viun10g01884 427 Gene3D Dihydrofolate Reductase, subunit A 211 424 IPR024072 -
Viun10g01884 427 Gene3D Cytidine Deaminase, domain 2 62 210 - -
Viun10g01884 427 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 71 193 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01884 Viun-Chr10 33618515 33620498 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01884 K11752 - gmx:100786393 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01884 10 33618515 33620498 Viun10g01884 10 33618515 33620498 ECH