Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01844 ATGGCAGAAACAACAAAAGGTTATGCTGTTGTCACAGGAGCAAATAAGGGAATTGGATTTGCAGTATGCAAGCAATTGGCTTCAAATGGATTCACTGTGGTGCTCACAGCCAGAGATGAGAAGAGGGGTGTTGAAGCTGTTCAGAAACTCAAAGAACTTGGTCTCCCTGGCCATGTTGTTTTTCATCAACTTGATGTTACTGATCCAAAAAGTATAAAATCGCTCGCAGATTTCATCAAAAACCAGTATGGGAAACTGGATATCTTGGTAAACAATGCTGGAATTCCTGGGGCACATGTGGACGGTGAGGCTTTGTCTTCTGCTGGTATTATGGAAAATGCTGGTCTTGTTGATTGGAGTAAAATAGTAACTGAAACCTATGAATTAGCCGAAGCAGGTCTTAAAACAAACTACTATGGAGTGAAGGAATTAACCAAAACACTTATTCCCCTTCTTCAGTTTTCAAGCTCCCCAAGAATTGTAAATGTTTCCTCATCCATGGGAAGGCTTGAGAATATGAAGGATGGATGGCCTAAAGAAGTACTTAGTGATGTTGAAAACCTTACAGAAGAAAAGATTGATGAGGTTTTGAATGAATATCTAAAGGACTTTAAAGAGGGTTCACTAGAAACCAAAGGGTGGCCTTTTGCAATGTCTGCATATAGTGTCTCAAAAGCTGCTCTTAATGCCTACACAAGGGTTGTGGCAAAGAAGTATCCCTCATTCTGCATCAATGCTGTTTGTCCAGGCTATGTTAAAACAGATATAAACTATAATACAGGTATTCTCACACCTGATGAAGGTGCTGAAGCTGCAGTGAGATTGGCACTGCTACCAGATGGTAGCCCTTCTGGCCTCTTTTTCTTTAGAACTGAAGAGAAACCATTTTGA 891 0.4052 MAETTKGYAVVTGANKGIGFAVCKQLASNGFTVVLTARDEKRGVEAVQKLKELGLPGHVVFHQLDVTDPKSIKSLADFIKNQYGKLDILVNNAGIPGAHVDGEALSSAGIMENAGLVDWSKIVTETYELAEAGLKTNYYGVKELTKTLIPLLQFSSSPRIVNVSSSMGRLENMKDGWPKEVLSDVENLTEEKIDEVLNEYLKDFKEGSLETKGWPFAMSAYSVSKAALNAYTRVVAKKYPSFCINAVCPGYVKTDINYNTGILTPDEGAEAAVRLALLPDGSPSGLFFFRTEEKPF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01844 296 CDD carb_red_PTCR-like_SDR_c 8 296 IPR045313 GO:0016616
Viun10g01844 296 Pfam short chain dehydrogenase 9 170 IPR002347 -
Viun10g01844 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 8 294 - -
Viun10g01844 296 Gene3D - 2 296 - -
Viun10g01844 296 FunFam (+)-neomenthol dehydrogenase 2 296 - -
Viun10g01844 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 282 IPR036291 -
Viun10g01844 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Viun10g01844 296 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Viun10g01844 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Viun10g01844 296 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Viun10g01844 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Viun10g01844 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Viun10g01844 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Viun10g01844 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Viun10g01844 296 Pfam Enoyl-(Acyl carrier protein) reductase 212 270 - -
Viun10g01844 296 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 208 236 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01844 Viun-Chr10 33396965 33399006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01844 10 261 Acyl Lipid Metabolism Gene Families AT1G24360 20.000 2.03e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01844 K15095 - gmx:100803877 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01844 10 33396965 33399006 Viun10g01844 10 33396965 33399006 ECH