Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01720 ATGGCGGATGCTGATCTCACCGCCCCGCTACTCTCCCCCGATCACATCGTACTAACCGTCCACTCCTCCGCCGCTCCCTCCGCCGATGGCAACCCCTACCGCGCGCTCGGATGTGACGACGAGCTCCTTGTGCCGCCTCCGACAACCCTGGACCCCTTCCGCAACGGCACGCCGACGGTGGAGGGGCTGTATGAGTGGGTGAAGACGGTGCTGTGTCTGCCGGTGGCGCTGCTGCGGCTCGCGCTGTTCGGGCTGTGCCTCGCCGTCGGGTACGTGGCGACGAAGGTGGCGCTGGAAGGGTGGAAGGACAAGGAGAATCCCATGCCGAAGTGGAGGTGTAGGGTTATGTGGATCACAAGAATGTGCGCCCGATGCATTCTGTTTTCGTTTGGCTATCAGTGGATAAAACGGAAAGGAAAACCTGCACCCAGGGAAATTGCTCCTATAATTGTATCCAATCATGTATCATACATTGAACCTATCTTCTATTTCTACGAATTATTTCCCACTATTGTGGCATCTGAGTCTCATGACTCCATACCTTTTGTTGGCACCATTATAAGAGCAATGCAGGTCATATATGTTAACAGATTCTTACCATCATCAAGGAGGGAGGCTATCAGGGAAATAAAGAGAAGGGCCTCTTGTGATAAATTTCCTCGAGTTTTATTATTTCCTGAGGGGACGACAACCAATGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTTATCCCAGGATACCCAATCCAGCCTGTAATTGTACGCTATCCTCATGTGCACTTTGACCAATCCTGGGGTAATGTTTCTTTGGGGAAGCTTATGATCAGGATGTTCACTCAATTTCACAATTTCTTTGAGATAGAATATCTTCCAGTTGTTTATCCCTTGGATGATAAGGAAACTGCAGTTCATTTTCGGGAGAGGACTAGCCGTGCTCTTGCAACTGCAATGAATGCTGTCCAGACAGGACATTCTTATGGAGACACAATGCTTTATTTGAAAGCACAAGAAGCAAAACAGGAGAACCCCTCAAGTTATATGGTTGAAGTAACTAAGTTTGAAGCATCATTTCATGTCAGCAGCATGGAAGTGGTGGACTTTCTGGATAAATTCTTGGCCATGAATCCTGATCCCAGTGGTCGTGCCCAATATCATGACTTCTTGAGGGTTTTAAGACTTAAGGCTTGCCCGCTATCTGCAAAGATATTTTCATTCATTGATGTGGAGAAGTGTGGGACAATTACTTTCAGACAGTTCTTGTATGGATCTGCCCATGTGATGTCGCAACCAGGGTTCCATCAAGCCTGTGAAGAAGCCTTTGCTGGGTGTGGTGGTGCAGTAAAGCCCTATATTGTAGAACAAGAGTTACGAGATTTCATCCAACCTGTTATCATCAGCTGGAATGCGGATGAGGTCAATGAACTTTTTATGTTATTTGATAACGATAACGATGGAAGAGTTGACAAAAATGATTTTGTTTCATGCCTTAGAAGAAATCCTCTTCTCATTGCATTTTTTACACCTCAACCAAAGCAAAAGGAATTTGAAGGTAATGGAGTGATAGAGATAGTGTGA 1578 0.4651 MADADLTAPLLSPDHIVLTVHSSAAPSADGNPYRALGCDDELLVPPPTTLDPFRNGTPTVEGLYEWVKTVLCLPVALLRLALFGLCLAVGYVATKVALEGWKDKENPMPKWRCRVMWITRMCARCILFSFGYQWIKRKGKPAPREIAPIIVSNHVSYIEPIFYFYELFPTIVASESHDSIPFVGTIIRAMQVIYVNRFLPSSRREAIREIKRRASCDKFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVIVRYPHVHFDQSWGNVSLGKLMIRMFTQFHNFFEIEYLPVVYPLDDKETAVHFRERTSRALATAMNAVQTGHSYGDTMLYLKAQEAKQENPSSYMVEVTKFEASFHVSSMEVVDFLDKFLAMNPDPSGRAQYHDFLRVLRLKACPLSAKIFSFIDVEKCGTITFRQFLYGSAHVMSQPGFHQACEEAFAGCGGAVKPYIVEQELRDFIQPVIISWNADEVNELFMLFDNDNDGRVDKNDFVSCLRRNPLLIAFFTPQPKQKEFEGNGVIEIV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01720 525 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Viun10g01720 525 Pfam Acyltransferase 145 252 IPR002123 GO:0016746
Viun10g01720 525 Pfam EF-hand domain pair 468 499 IPR002048 GO:0005509
Viun10g01720 525 SMART plsc_2 148 258 IPR002123 GO:0016746
Viun10g01720 525 CDD LPLAT_LPCAT1-like 123 331 IPR045252 GO:0008374
Viun10g01720 525 SMART efh_1 472 500 IPR002048 GO:0005509
Viun10g01720 525 Gene3D - 349 503 - -
Viun10g01720 525 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 45 350 - -
Viun10g01720 525 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 122 326 - -
Viun10g01720 525 SUPERFAMILY EF-hand 359 508 IPR011992 -
Viun10g01720 525 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01720 Viun-Chr10 32364024 32372083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01720 98 333 Acyl Lipid Metabolism Gene Families AT1G80950 30.483 4.79e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01720 K13510 - gmx:100818109 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01720 10 32364024 32372083 Viun10g01720 10 32364024 32372083 ECH