Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01195 ATGGTCGGAAAAACCATGTCCATGGCGGCAACTTCGCGCGAAAAGCTCGCAAGTCTCCTGAACGCAGCCAAGTTGGCCAGTGACATCCCATCCAAGCTCGAATCCCTGCGCCAACTGCGCCATGAACTTCCACCCGAAGACCCCGTCCTCCTCACTGAGTTCCTCCCCTCACTCTTCTTCTTCCACTCAGATCCCTTTGGCCCTGTTCGCAAATTTGTCACCGAGATGCTTGGTGAGATTGGATTGAAGAATACCGAGTTTTTGTCTGACATTGTGCCTGTCCTAATTGAGGTACTGAATGACGACACACCGGCTGTGGTTCGGCAAGCTCTTCTGTGTGGAATTGAGTTATTTCGTGGCACACTTGAGAAAATTGTGGTTCAGGGTCTTTACTCTAGTGATTTAGATGGTGCACTCGAATCTGCATGGGAATGGATGCTTAAATTCAAAGAAAAAGTATACTCAATAGCTTTTCAACATGGAAGTGGTGGTGCTAAGCTCCTGGCACTGAAATTTGTTGAGGCAGTTGTTCGTCTTTACACTCCTGATCCTAGTGGTTCCTCAGAGCCTACTTCTCATCAAGGAAAGCCTGTAGAATTTAATATATCATGGCTGAGGCGTGGTCATCCAGTACTTAATATTGGAGATTTGAAAATTGAAGCTAGCCATAGTGTGGGTCTCTTGCTTGATCAACTCAGATTTTCAAATGTGAAGTCCCTTAGTAACTCAGTTATCATTGTGCTGATTAAAAGTCTTTCAGCTATTGCAAATGAAAGGCCTGCATTCTATGGCCGCATCTTGCCAGTTTTGCTTAGTTTGCAACCTTCCAGCACTGTTGTTAATGGGTTCTGTGTATCAGCTGCACATCTTGCTTTGAAGAATGCCTTTCTTACTTGCTCGAAATGTACACATCCAAGTGCTGCTCCGTGGAGAGATCGTTTGGCAGGGGCCTTGAAGGAAATACAGTCAGAAGGAAAGGCAGATCGGGTGTTCCACCTAATCTCATCTAGCAATGGAAGCATTGAGAGAGAGAAGGATGATCAACCTGTTATCAAGGAAGAGGAACCTGCAATAAATTCTGATGATTCAGTACACAGTAATTTGGCAAGAAAACGATCTGGATCACAAATTGAAGGTGATTTAGCTGAAGATGTTCCTGGAAAACGTGTCAGGGCAACAATTGATGCTTTGGAAGAACCTAAGAAAGAGTTGGATGAACGTACCATTTCCAACTCTCAGGATGAGACTCCTTCAAATGTACCAGCATCTTCAAAAGGAGATATGGATAATGGGCCCGTACGGCAGCTTGTTGCCACATTTGGTGCTTTGATTGCTCAAGGTGAAAAAGCTGTTGGGCATCTTGAGATTCTCATCTCAAGTATTTCTGCCGACTTGCTAGCTGAGGTGGTGATGGCAAATATGCAAAACTTACCTCCAAAATTCCCTAATACTGAAGGAAATGAACAGCTGCAAGACATTAATATGATTGGTTCTGATGACAAGGCTAAATATCCACCATCATTTGTAGCCGCTGTTATGTCACTTTCTAGTACTTTTCCACCAATAGCTTCCCTTCTTGATGCACAACAATCAGTTTCAAATGAGATTGAGAAGTCACAAGGGGAGGAAGAAATTTCTGCAACTGCTGTCAATAGTGGTGCTGTTCACTCTGGCATGAATCTTGTATCTGAAAATGTACCATCTCCTACTGATTTTCCAACTTCTGATGCTAGTATACCTGGAGTGGAGAATGGCTGTACAACTATGCCTCCTGACATCCATGATGTTGGAAACTCAGAGAGCGGAATTCCTGGCCTGGATTCTTTTGGTCGGAGTGATGCCTTATCACAAAGTTTTGATCCTTCTTTATTGGCTTCCACTGAAGTGGGCCTAGAAGATGGCAGCCAAGAGCAAGATACAAGTTTGGATCTGAGGTCACCCCTGAACTTAGCTCCATCAGTATCAACAGATAGATCTGAGGAGCTGAGCCCAAAAGCGGCTGTTAGAGATGTCAATAGCATGGTGTCGTCAACAGCTACTTCAGTTGTGTTGCCTTCCCGTTTAATCTTGCCAAAGATGATTGCTCCTGTTGTTGAACTTGAAGATGAACAAAAGGATCATTTGCAAAAATCATGTTTTATGCGTATTATTGATGCATATAAGCAAATAGCTGCAGCTGGAGGTTCCAAAGTCCGTTTTTCAATCCTTGCTTATTTAGGAGTTGAGTTTCCCTTGGAATTAGACCCATGGCAACTATTACAGAAGCATATTTTGATTGATTACACTAGTCATGAGGGACATGAGTTGACATTACGTGTCCTCTACAGATTATTTGGTGAGGCTGAAGAGGAGCCTGACTTCTTTTCTTCCACTACTGCAGCTTCTGTCTATGAAAAATTCCTCCTTACTGTGGCAGAAGCACTTAAAGATTCCTTTCCACCTTCTGATAAATCATTGAGTAAATTGCTTGGTGAATCTCCTTATTTACCAAAATCAGTTCTTAAAATTTTAGAAAACATGTGTTCTCCCGGAAATGGGGATAGAGGTGAAAAGGAATTACAGTCACTGAATGCGGATAGAGTTACTCAAGGTCTAAGTGCTGTATGGAGTTTGATTCTTCTTAGGCCTCCGATCCGAAATACTTGCTTACAAATTGCTTTACAGAGTGCAGTGCATCATATGGAAGAAGTGCGTATGAAGGCGATACGTCTGGTAGCAAATAAGCTTTATCCTTTGTCATCCATTTCTCAGCAAATAGAAGATTTTGCAAAGGAAATGCTTTTCTCAGTTACGAGTAGTGATGTTTCAGAATTAACAGATGCTGAAGGGTCCATTGCTGATTCACAAAAGGGACCTGATGTTGAAAAGGTTTCAAACGAACAATCATCATTGAGTGGCAGCACTAAAGATGTTTCGGATAATCGTCAATCATGCACATCTGAGAGTGTCTCACCAGATTCAGTTTCTGAGGCTCAGAGGTGCATGTCATTGTATTTTGCTTTGTGTACAAAGAAACATTCTCTCTTTCGCCAAATATTTGTCATCTATAGAAGCACATCAAAGGCAGTGAAGCAGGCAGTACATCGACAAATCCCAATACTCGTACGCACTATGGGCTCATCTCTTGATCTCCTTGAAACTATTTCAGATCCTCCAAACGGAAGCGAGAATCTTCTAATGCAGGTGTTGCATACACTTACAGATGGTACGGTCCCTTCTAAGGATTTAATAAGCACCGTGAAAAGGTTGCATGATTCAAAACTCAAGGACGCAGAAGTTCTTATTCCTGTATTACCATTCCTATCAAATGAAGAGGTGATACCGATTTTTCCTCACATTGTGAATCTTCCTTTGGAGAAGTTCCAAACAGCACTTGGTCGCGTATTACAGGGATCATCACAATCTGGTCCGGTGCTTTCTCCGGCTGAAGTTTTAATTGCAATTCATGGAATTGATCCTGAAAGGGATGGAATTCCCTTAAAAAAGGTGACAGATGCGTGCAATGCTTGTTTTGAGCAGCGACAAACTTTTACGCAGGAAGTTATTGCCAGAGTTTTGAATCAGTTGGTTGAGCAGATTCCTCCTCCTTTACTATTCATGCGTACAGTGTTACAAGCAATTGGTGCTTTTCCATCACTGGGGGACTTTATCATGGGGATTCTTTCTCGCCTTGTGACGAAGCAGATATGGAAATATCCGAAGTTGTGGGTGGGATTCTTGAAGTGTGTGCAGCTGACGAAACCACAGTCTTTTAGCGTTTTGCTTCAGGGCTGTGCTGGTTGTTCTTGGACTTGCATCCGATTCTCAGGTTTCAAGTCAAGCACAAACTACTCAAACACAAACTTCTCAGACACAGACTACTCAGACACAAACTAG 3876 0.427 MVGKTMSMAATSREKLASLLNAAKLASDIPSKLESLRQLRHELPPEDPVLLTEFLPSLFFFHSDPFGPVRKFVTEMLGEIGLKNTEFLSDIVPVLIEVLNDDTPAVVRQALLCGIELFRGTLEKIVVQGLYSSDLDGALESAWEWMLKFKEKVYSIAFQHGSGGAKLLALKFVEAVVRLYTPDPSGSSEPTSHQGKPVEFNISWLRRGHPVLNIGDLKIEASHSVGLLLDQLRFSNVKSLSNSVIIVLIKSLSAIANERPAFYGRILPVLLSLQPSSTVVNGFCVSAAHLALKNAFLTCSKCTHPSAAPWRDRLAGALKEIQSEGKADRVFHLISSSNGSIEREKDDQPVIKEEEPAINSDDSVHSNLARKRSGSQIEGDLAEDVPGKRVRATIDALEEPKKELDERTISNSQDETPSNVPASSKGDMDNGPVRQLVATFGALIAQGEKAVGHLEILISSISADLLAEVVMANMQNLPPKFPNTEGNEQLQDINMIGSDDKAKYPPSFVAAVMSLSSTFPPIASLLDAQQSVSNEIEKSQGEEEISATAVNSGAVHSGMNLVSENVPSPTDFPTSDASIPGVENGCTTMPPDIHDVGNSESGIPGLDSFGRSDALSQSFDPSLLASTEVGLEDGSQEQDTSLDLRSPLNLAPSVSTDRSEELSPKAAVRDVNSMVSSTATSVVLPSRLILPKMIAPVVELEDEQKDHLQKSCFMRIIDAYKQIAAAGGSKVRFSILAYLGVEFPLELDPWQLLQKHILIDYTSHEGHELTLRVLYRLFGEAEEEPDFFSSTTAASVYEKFLLTVAEALKDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSPGNGDRGEKELQSLNADRVTQGLSAVWSLILLRPPIRNTCLQIALQSAVHHMEEVRMKAIRLVANKLYPLSSISQQIEDFAKEMLFSVTSSDVSELTDAEGSIADSQKGPDVEKVSNEQSSLSGSTKDVSDNRQSCTSESVSPDSVSEAQRCMSLYFALCTKKHSLFRQIFVIYRSTSKAVKQAVHRQIPILVRTMGSSLDLLETISDPPNGSENLLMQVLHTLTDGTVPSKDLISTVKRLHDSKLKDAEVLIPVLPFLSNEEVIPIFPHIVNLPLEKFQTALGRVLQGSSQSGPVLSPAEVLIAIHGIDPERDGIPLKKVTDACNACFEQRQTFTQEVIARVLNQLVEQIPPPLLFMRTVLQAIGAFPSLGDFIMGILSRLVTKQIWKYPKLWVGFLKCVQLTKPQSFSVLLQGCAGCSWTCIRFSGFKSSTNYSNTNFSDTDYSDTN 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01195 1291 Pfam Symplekin tight junction protein C terminal 1090 1256 IPR022075 -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 411 425 - -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 376 410 - -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 940 985 - -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 955 985 - -
Viun10g01195 1291 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 7 1256 - -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 631 660 - -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 631 665 - -
Viun10g01195 1291 Gene3D - 2 348 IPR011989 -
Viun10g01195 1291 SUPERFAMILY ARM repeat 33 1197 IPR016024 -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 338 431 - -
Viun10g01195 1291 Pfam Symplekin/PTA1 N-terminal 104 323 IPR032460 -
Viun10g01195 1291 MobiDBLite consensus disorder prediction 339 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01195 Viun-Chr10 21897521 21928887 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01195 K06100 - gmx:100779360 2174.05