Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00605 ATGGCCATGGCAGTGATTTCTCTGTTCATCTTGTTTTTCTCATTCTCCATATCCAGAGGTGAAATTTCAGGGGAAGTGGGAGTGAACTATGGGCGATTGGGGTCGGACCTTCCACCGCCGAGAATCTCGGTGCGTCTGATACAGTCGCTGCTGAAAGCGAAGCGCGTGAAAATCTACGACGCAGACGCGGAAATTCTGGAAGCGCTTCAGAACACAGGAATTCAGGTGTCGATCATGCTCCCGAACGAGCTTGTGGTGAACGCCTCCACCAACCAGACATTCTCGGACCAATGGGTTCGATCCAACGTCGTACCGTTTTACCCAGAAACGCTCATCCGCTACCTCCTCGTCGGCAACGAACTCATCAGCAGCACAGGCAACGAAACATGGCCCCACATTGTTCCCGCGATGCACCGAATCTCACACTCTCTGAAAGTTTTCCGTTTGCGCAAGGTCAAAATCGGAACTCCACACGCCATGGACGTTTTGCAATCGTCGTTTCCACCGTCAAACGGCACTTTCAGAAACGACATTGCGCTTCCCATCATCAAGCCAATGTTACAGTTCCTCCACAAAACACGCTCCTTCTTCTTCCTAGACGTGTACCCGTTTTTTGCGTGGGCCTCCGACCCGACCAACATTAACCTCAGTTACACCCTCTTCGAGTCCAGAAACATCACGGTAACGGACTCGTTAACTGGGTTAATCTACACCAACCTATTCGACCAGATGGTTGACGCCGTTTATTACGCCATGAAACGGCTCGGGTACCCGGATATTCGGATCTTCATCGCAGAAACGGGTTGGCCCAATGGGGGAGACTTGGACCAAGTTGGCGCCAACGTCCACAATGCTGCCACGTATAACAGAAACGTAGTCAAGAGGCTTACCCAAAAACCGGTTTTGGGAACCCCGGCTCGACCGGGTCTGGTTCTTCCGGCTCTCATATTTTCGCTTTATAATGAGAACTTAAAGCCGGGTTTAGGTTCGGAGCGACATTTTGGGTTGTTGTACCCGAACGGGTCGAGGGTTTACGACATTGATCTCTCTGGCAAGACTCCGGAGTCGGAGCTCGCACCAGTGCCGCCGGCGATGGATTATAAAGGGAAGGCGTGGTGTGTCGTGGCAGAGGGGGCGAATGTGACGGAGGTGGCGGTGGCGTTGTCTTACGCTTGCTCGCAGGGAAATGGAACGTGTGACCCGATTCAACCAGGGAACCCGTGTTATAAACCCGATTCGGTGACGGGTCATGCAGATTACGCGTTCAGTGCTTATTGGGCTCAGTTTAGGGGCGTGGGAGGAACGTGCAATTTCAATGGGCTTGCAACCCAAACGGCAAAGGATCCAAGTTATGGTTCTTGCAAGTTCCCAAGTGTGACGCTTTGA 1386 0.5238 MAMAVISLFILFFSFSISRGEISGEVGVNYGRLGSDLPPPRISVRLIQSLLKAKRVKIYDADAEILEALQNTGIQVSIMLPNELVVNASTNQTFSDQWVRSNVVPFYPETLIRYLLVGNELISSTGNETWPHIVPAMHRISHSLKVFRLRKVKIGTPHAMDVLQSSFPPSNGTFRNDIALPIIKPMLQFLHKTRSFFFLDVYPFFAWASDPTNINLSYTLFESRNITVTDSLTGLIYTNLFDQMVDAVYYAMKRLGYPDIRIFIAETGWPNGGDLDQVGANVHNAATYNRNVVKRLTQKPVLGTPARPGLVLPALIFSLYNENLKPGLGSERHFGLLYPNGSRVYDIDLSGKTPESELAPVPPAMDYKGKAWCVVAEGANVTEVAVALSYACSQGNGTCDPIQPGNPCYKPDSVTGHADYAFSAYWAQFRGVGGTCNFNGLATQTAKDPSYGSCKFPSVTL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00605 461 Gene3D Glycosidases 25 355 - -
Viun10g00605 461 SUPERFAMILY (Trans)glycosidases 26 348 IPR017853 -
Viun10g00605 461 SMART X8_cls 371 456 IPR012946 -
Viun10g00605 461 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Viun10g00605 461 FunFam Glucan endo-1,3-beta-glucosidase 14 24 354 - -
Viun10g00605 461 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 13 445 IPR044965 GO:0004553|GO:0005975
Viun10g00605 461 Pfam Glycosyl hydrolases family 17 26 348 IPR000490 GO:0004553|GO:0005975
Viun10g00605 461 Gene3D - 365 459 - -
Viun10g00605 461 Pfam X8 domain 372 443 IPR012946 -
Viun10g00605 461 FunFam Glucan endo-1,3-beta-glucosidase 4 366 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00605 Viun-Chr10 5672884 5677862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00605 22 461 Glycoside Hydrolase AT3G23770 51.345 1.00e-172 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00605 - - ccaj:109805358 770.385