Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00388 ATGGATCACGCTTTCAGGCATAGATACCATAGATTGACAGCTCATCACCTCACCCCAGGCCACGGCGGATGCTCCGCCCGAGTGGTGGAGCCTTCTGGTGCTGCGGATTCGGGAGGTGGAGAGGTGGGAGTGACAAAGTTCAAAGCTTTGAGGGGAACGAGGGACCCAGTTGCGGAACGGGAGGATGAGGAACCCCAGGTGGGGATTCTGACGGGGAGGGTGAGGAAGGAGAAGGGGAGGGGGAAGAAGAAATTTTATGAAGTTGAAGCTATACGTCGCAAGAGGGTGCGCAAGGGTCAGGTGCAATACTTTATCAAATGGAATGGGTGGCCTGAGACAGCCAACACTTGGGAGCCACCAGAAAATCTGGTTTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAGCTTGAAGTCAGGAAGACACCGTAAGCGCAAACGCAAGCACGTGGTGCATCATACTCAACCCAAGAAGAGGCTGGAGCGTTCTACCACTCCTTACAGTCTTCGACGCTTTTCGAGTACCGTTGGAAGCCATTCACAGTCTGCTCTTCCTGTTCTTAGTGACGCTAGCCTTCCTGTTATTCCTGCCTTTCCTCAGACTGTTCTTTTTGCTGATGAATTGGGAAATGGTGCTGGCAACAATCTTGAAAGTGCCATACCTGTTAATGTTAACAAATCTCCAATTGTTTCAGAACAAAATGTTGAAAGGAATGAGGAAAATGATTATGATCCTAAGCTTAGTGAGCTGAAAGCCTCTTCTGCCGGTGGGAATGAAGCTGACAGGCTTGCAATACGGATTCCAGAAGCAATGCCTTCTGGTCCTGGGTTTGCTGGCAATAATGGTCAAACAGTTGCTAAGCCAAAGGGGGTTCGCATGGAAACAAGTGAAAGTGGTCGCTGCCGAGGAGCCAAAAGGAGAAAATCTGGTTCTGTAAAGAGGTTCAACAAAGAATTATATGCTGGTGAGCCTGCCAATACACAGAACCCAATTGGAGCAGCTGTTAGTACAGATGAGTCAGCCCTACTAACACGGAATGTTGGTAGTGGTGCTAATCATGCCAGACCTGCTAGCAATATTGTAAAGATTATAAAGCCAATAGGCTATTCAGCTTCTGTAGCCAGCGGAGCGCAGGATGTTTTGGTAACCTTTGTGGCTTCAAAGTCTGATGGAACAGAGGTGATGGTTAACAACAAGTATCTAAAAGCATTTAATCCACTTCTGCTCATCAATTTCTATGAGCAGCATCTTCGCTACAGCCCTACATCTTGA 1272 0.4788 MDHAFRHRYHRLTAHHLTPGHGGCSARVVEPSGAADSGGGEVGVTKFKALRGTRDPVAEREDEEPQVGILTGRVRKEKGRGKKKFYEVEAIRRKRVRKGQVQYFIKWNGWPETANTWEPPENLVSVPDVVEAFEESLKSGRHRKRKRKHVVHHTQPKKRLERSTTPYSLRRFSSTVGSHSQSALPVLSDASLPVIPAFPQTVLFADELGNGAGNNLESAIPVNVNKSPIVSEQNVERNEENDYDPKLSELKASSAGGNEADRLAIRIPEAMPSGPGFAGNNGQTVAKPKGVRMETSESGRCRGAKRRKSGSVKRFNKELYAGEPANTQNPIGAAVSTDESALLTRNVGSGANHARPASNIVKIIKPIGYSASVASGAQDVLVTFVASKSDGTEVMVNNKYLKAFNPLLLINFYEQHLRYSPTS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00388 423 CDD CD_CSD 86 135 - -
Viun10g00388 423 Pfam Chromo (CHRromatin Organisation MOdifier) domain 86 135 IPR023780 -
Viun10g00388 423 SMART ChS_2 349 422 IPR008251 GO:0005634
Viun10g00388 423 MobiDBLite consensus disorder prediction 137 165 - -
Viun10g00388 423 SUPERFAMILY Chromo domain-like 84 141 IPR016197 -
Viun10g00388 423 ProSitePatterns Chromo domain signature. 103 123 IPR023779 -
Viun10g00388 423 MobiDBLite consensus disorder prediction 140 156 - -
Viun10g00388 423 Gene3D - 59 138 - -
Viun10g00388 423 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 64 422 IPR044251 GO:0006325|GO:0031507
Viun10g00388 423 MobiDBLite consensus disorder prediction 271 308 - -
Viun10g00388 423 ProSiteProfiles Chromo and chromo shadow domain profile. 86 145 IPR000953 -
Viun10g00388 423 SMART chromo_7 85 138 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00388 Viun-Chr10 3246566 3258220 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00388 - - gmx:100812329 494.582