Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00348 ATGATTTTGTTCACAAACACAAACGGTCTCAGAATTTTCGGAAAAGCAGGATTAGTCGATGGTTATGGTTCCTCTTGGTGGCCATGCAAAAATTGTCCAAGACCAGCGGTCCTTGGTTTTAATGCATGCAATGGGCTCAGTGTTAATTACCTGAGCATCAGAAATAGTCCCAGAGCTCACATAACCATAAATGGTTGTGAGGGTGCCACATTCTCTCACATTAACATTCGTTCTCCTGCTGATAGTCCTAACACTGATGGAATTAACATTTCTTCTTCCAAAAATATATTGATAAAAGATTCCAACATAGCTTCTGGTGATGATTGTATTGCAATCATAGGTGAATCTTCTTACATTAATGCCACTGGAATTGCTTGTGGACCAGGACATGGAATAAGCATTGGTAGCCTGGGTAGAAACAATGGCCGTGACATTGTGGAACATGTTCGTGTTTATAATTGTAGCTTCACGAAAACTACAAATGGAGCAAGAATCAAGACATTTTCGGGTGGATCAGGTTATGCCAAAAGAATCACATTTGAGAAAATCACATTAAACCAATTTTACAACCCTATAATTATAGATCAACACTATAATCATATGAATGCAGGAGGAGGAGTCCAAGTGAGTGAGGTGACATTTCGTGGGTTTCGAGGAACATCTACAAACGACAGAGCTATAAATTTAGGTTGTGGTTCACCAGGTTGCTTCAACATTGTGTTGGATAAAATCAAAATTGTTTCTTCTCAACCAAGAAAACCAGCTTCTTGTTCATGTAGAAATGCTCATGGAAGAGCTACATCCACTGTTCCAAATTGTAATATCTCATTGAGATGA 837 0.3871 MILFTNTNGLRIFGKAGLVDGYGSSWWPCKNCPRPAVLGFNACNGLSVNYLSIRNSPRAHITINGCEGATFSHINIRSPADSPNTDGINISSSKNILIKDSNIASGDDCIAIIGESSYINATGIACGPGHGISIGSLGRNNGRDIVEHVRVYNCSFTKTTNGARIKTFSGGSGYAKRITFEKITLNQFYNPIIIDQHYNHMNAGGGVQVSEVTFRGFRGTSTNDRAINLGCGSPGCFNIVLDKIKIVSSQPRKPASCSCRNAHGRATSTVPNCNISLR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00348 278 SMART pbh1 146 167 IPR006626 -
Viun10g00348 278 SMART pbh1 66 92 IPR006626 -
Viun10g00348 278 SMART pbh1 204 231 IPR006626 -
Viun10g00348 278 SMART pbh1 175 196 IPR006626 -
Viun10g00348 278 SMART pbh1 93 114 IPR006626 -
Viun10g00348 278 SUPERFAMILY Pectin lyase-like 1 272 IPR011050 -
Viun10g00348 278 PANTHER - 2 264 - -
Viun10g00348 278 Gene3D - 1 266 IPR012334 -
Viun10g00348 278 ProSitePatterns Polygalacturonase active site. 123 136 IPR000743 GO:0004650|GO:0005975
Viun10g00348 278 Pfam Glycosyl hydrolases family 28 2 263 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00348 Viun-Chr10 2878372 2880632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00348 2 269 Glycoside Hydrolase AT4G35670 46.715 8.68e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00348 K01184 - gmx:100801217 375.941