Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00346 ATGAAGACACTAATAATCACTTGTGTTTTGATTCTTTTCTTTGTTTCACCATGTTTCTGTAAGAGGTTGTTGTTGGCAAGTTCCAACACATACAATGTGATTTATTATGGTGCCAAAGGAGATGGTAAAACTGATGACTCCCAGGCATTTTTAAGTGCATGGGAAAAGACTTGTGCAACAGGTGGATCAACCCTAGTTATACCATCAAAAGGAACATTTTTACTGAAGAAGAACTTAATGTTCAAAGGTCCTTGCCAAGCCACAAACATTCAAATTCAGCTCCATGGAAAAATAATTGTACCAACCCAGAAAGCTTGGCAGGGTAATGACTCTCCGATAATTATGATCTCAAACGTCAATGGTCTCACCATCGATGGAACTGGTGGACTAATCGACGGCCTCGGTTCTTCTTGGTGGTCATGCGAAAGCTGTAAACGACCAACGGTCCTTGCTTTCCATGCATGCAATGGTCTGAGAGTTAGTTCCTTGAGCATCTCAAATAGTCCACAAGCTCACATACACATAAATGGTTGTGAGGGTGCCACATTCTCCAATATTAACATTAAGTCTCCTGGTGATAGCCCTAACACAGATGGAATCGACATTTCTTCTTCCAAACGCGTCTTGATAAAAGATTCCCACATAGCTTGTGGTGATGATTGTATTGCAATCATAGGTGACTCTTCTGACATTAATGCCACCGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTCGGTAGAAACAATGGCCATGACAACGTGGAACAGGTTTATGTCTATAATTGCACCTTCACCAGAACTACAAATGGAGCAAGAATCAAGACATTTAAGGATGGACCAGGTTATGCCAGAAACATCACTTATGAGAAAATTACGTTAATACAAGCTTATAACCCAATACTTATAAATCAACACTACGTAGGTTTAGAGGGTGTAGGAGGAGTTGAAGTGAGTGGGGTGACATTTCGAGGGTTTGAAGGAACATCAGGGGATGACAGAGCTATTACCTTAGCTTGCGGATCACGAGGTTGTCACGACATTTTGTTGGATAAAGTTAACATAAAATCTTCTAAAACAGGAAAAGCAGCAGCTTGTTCTTGCACTAATGTCCATGGAATAGCTACATCCACAGTTCCAAGTTGTCATGGCATATACAAATGA 1173 0.4101 MKTLIITCVLILFFVSPCFCKRLLLASSNTYNVIYYGAKGDGKTDDSQAFLSAWEKTCATGGSTLVIPSKGTFLLKKNLMFKGPCQATNIQIQLHGKIIVPTQKAWQGNDSPIIMISNVNGLTIDGTGGLIDGLGSSWWSCESCKRPTVLAFHACNGLRVSSLSISNSPQAHIHINGCEGATFSNINIKSPGDSPNTDGIDISSSKRVLIKDSHIACGDDCIAIIGDSSDINATGIACGPGHGISIGSLGRNNGHDNVEQVYVYNCTFTRTTNGARIKTFKDGPGYARNITYEKITLIQAYNPILINQHYVGLEGVGGVEVSGVTFRGFEGTSGDDRAITLACGSRGCHDILLDKVNIKSSKTGKAAACSCTNVHGIATSTVPSCHGIYK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00346 390 SMART pbh1 287 308 IPR006626 -
Viun10g00346 390 SMART pbh1 258 279 IPR006626 -
Viun10g00346 390 SMART pbh1 178 204 IPR006626 -
Viun10g00346 390 SMART pbh1 316 343 IPR006626 -
Viun10g00346 390 SMART pbh1 205 226 IPR006626 -
Viun10g00346 390 Pfam Glycosyl hydrolases family 28 63 375 IPR000743 GO:0004650|GO:0005975
Viun10g00346 390 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Viun10g00346 390 PANTHER - 28 376 - -
Viun10g00346 390 Gene3D - 24 387 IPR012334 -
Viun10g00346 390 SUPERFAMILY Pectin lyase-like 19 385 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00346 Viun-Chr10 2861756 2865248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00346 1 385 Glycoside Hydrolase AT5G17200 40.855 1.26e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00346 K01184 - gmx:100820332 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00346 10 2861756 2865248 Viun10g00346 10 2861756 2865248 ECH