Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00333 ATGGCGTTGTTGAGTGGTGGCACGCCATGGTCCAAGCTCGTTGCTCCTCCCATTTTCCACCGTTCTCACGCACCTCGCACCTTCCTATTCTTCAAACGACGCCGTTTCTCAGTCTCTGCTCTCTCTGAGCAGCCACCCGTTCGCGTCCGTTTCGCTCCGTCTCCAACCGGAAACCTCCATGTCGGCGGTGCTCGAACGGCCCTCTTCAACTACTTGTTCGCCAGGTCGAAAGGTGGGAAATTTGTGCTCAGAATTGAGGACACTGACTTGGAGAGGTCCACAAGGGAGTCTGAGGAGGCCATGCTCAAAGATCTCTCTTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGAGGGGATTATGGTCCTTACAGGCAGTCTGAGAGGAATTCTTTATACAAACAATATGCACAGAACCTACACCAATCTGGTCATGTTTATCGCTGCTTCTGTTCTAATGAGGAACTGGAGAAGATGAAGGAGGATGCTAAACTAAAGAATCTGCCACCAGTGTACACAGGTAAATGGGCCAGCGCAAGAGATGAGGAAGTTGAAGAAGAGCTGGCAAAAGGGACTCCTTATACATACCGGTTTCGAGTCCCTAAAGGAAGTTTAAAAATTAATGACCTAATTCGAGGCGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGCCAGCCTGTTTATAACTTCTGTGTAACAGTAGATGATGCTACCATGGCAATTTCCCATGTTATCAGGGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGGATTTCCCATGCCTTTGTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGCAAATTATCAAAACGACATGGAGCAACATCAGTGGGTCAGTTCCGGGAGATGGGATACCTACCGGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGAGATGGGACTGAAAATGAGTTTTATACACTTGGTCAACTTGTTGAAAAGTTCACTATTGAACGTGTTAATAAGAGTGGTGCTATCTTTGACTCAACGAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGGACGTCCGTCAGAGGAGTTGACCAAACTTATTGCAGAGTACTGGAAGACATCTGGCATACTCACAGTATCAGCTGGGCCTTTTATTGATGAAGCAGTTCAACTACTTAAGGATGGCATTGACTTGATAAATGATGCAGACAAGGCCCTTACTAACTTGCTTTCTTATCCTTTGCATTCTACTTTACAGAGCGATGAAGCAGAACCTCTCTTGCAAGATAATCTTTCTGAGTTTGCTGCTAGCCTCTTGGCAGCCTATGATAGTGGTGATCTGGTGGCAGCACTTGAAGACGGCCATGACGGCTGGAAATCGTGGGTGAAAGGCTTCGGTAAATCGCTTAAGCGTAAGGGAAAATCGCTCTTCATGCCTCTCAGAGTTCTGTTGACTGGAAAACTTCATGGACCTGACATGGGGGCAAGTGTTGTATTGCTCTATAAAGCTGGAACTAGTGATGTAGTGGCTCCTGAAGCTGGCTTTGTGACATTGGATGAAAGATTCAAAATGCTTAGGCAAATCAACTGGGAAACATTGTCCAAGGATCAACCTGTCAAAGAAACTGCTGCTTCTGTCTAA 1680 0.4565 MALLSGGTPWSKLVAPPIFHRSHAPRTFLFFKRRRFSVSALSEQPPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAMLKDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYAQNLHQSGHVYRCFCSNEELEKMKEDAKLKNLPPVYTGKWASARDEEVEEELAKGTPYTYRFRVPKGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPLFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFYTLGQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRGRPSEELTKLIAEYWKTSGILTVSAGPFIDEAVQLLKDGIDLINDADKALTNLLSYPLHSTLQSDEAEPLLQDNLSEFAASLLAAYDSGDLVAALEDGHDGWKSWVKGFGKSLKRKGKSLFMPLRVLLTGKLHGPDMGASVVLLYKAGTSDVVAPEAGFVTLDERFKMLRQINWETLSKDQPVKETAASV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00333 559 Gene3D HUPs 39 371 IPR014729 -
Viun10g00333 559 PRINTS Glutamyl-tRNA synthetase signature 79 92 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Viun10g00333 559 PRINTS Glutamyl-tRNA synthetase signature 50 62 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Viun10g00333 559 PRINTS Glutamyl-tRNA synthetase signature 251 259 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Viun10g00333 559 PRINTS Glutamyl-tRNA synthetase signature 64 75 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Viun10g00333 559 PRINTS Glutamyl-tRNA synthetase signature 235 245 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Viun10g00333 559 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 429 522 - -
Viun10g00333 559 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 356 515 IPR008925 GO:0000049
Viun10g00333 559 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 53 64 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Viun10g00333 559 Hamap Glutamate--tRNA ligase [gltX]. 46 529 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Viun10g00333 559 Pfam tRNA synthetases class I (E and Q), catalytic domain 47 362 IPR020058 GO:0004812|GO:0005524|GO:0043039
Viun10g00333 559 CDD GluRS_core 47 369 IPR033910 GO:0006424|GO:0008270
Viun10g00333 559 PANTHER GLUTAMATE--TRNA LIGASE 40 539 - -
Viun10g00333 559 SUPERFAMILY Nucleotidylyl transferase 47 355 - -
Viun10g00333 559 Pfam Anticodon binding domain 378 514 IPR045462 -
Viun10g00333 559 FunFam Glutamate--tRNA ligase, mitochondrial 40 371 - -
Viun10g00333 559 Gene3D - 428 520 IPR020751 -
Viun10g00333 559 NCBIfam glutamate--tRNA ligase 47 515 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00333 Viun-Chr10 2681137 2687714 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00333 K01885 - gmx:100810730 1045.42