Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00300 ATGTCCACTCCGTACCTTCACTCCGCTCCCACTCCTTCCCCTTCTTTCTCTCCGATCACCACTTCTCGCTTCTTCCAAACCTCTCGCGTCGCGTTCCGAAACGCCGTCCGCTGCAAGGCGATAGAAGCAGTGCAGTTGGAGAACGGGAGGCCGAGTGCTAATGAGGTCGCTGGCGGAAACGCGATTCCGAGCTACGTCGTAGCGCCGAACGCGCGGATTCGGGATTTGGTTCACCGGAACGACACTCGTCTGAGAATATTCTCCGGCACCGCCAATCCCGCGCTTTCTCAGGAAATTGCGTGCTACTTGGGTCTGGAGCTTGGAAAAATTAAGATAAAGCGTTTTGCTGATGGCGAGATATATGTTCAGCTCCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGACGCTTGCAGAAGAGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCAAAGCTTGTAGCAAATTTAATTACAGAAGCGGGTGCAAATCGTGTACTTGCTTGTGATCTCCATTCTGGGCAGTCCATGGGTTATTTTGATATTCCAGTTGATCATGTGTATGGACAGCCTGTCATACTTGATTACCTTGCCAGCAAAACTATTTGTTCAGACGATTTGGTAGTTGTCTCACCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCCTTGGCTATTGTTGATAAAAGGCGTCATGGGCATAATGTAGCAGAGGTGATGAATTTGATAGGTGATGTCAGGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGGGAAGTCTATGCATGCACTACGCATGCTGTTTTCAGTCCTCCTGCTATAGAGAGGTTATCAAGCGGTTTGTTTCAAGAAGTTATCATAACTAACACAATTCCAGTGGCAGAACAAAACTATTTCCCCCAATTAACTGTCCTGTCGGTGGCAAACCTTCTGGGCGAGACTGTATGGCGAGTTCATGATGATTGCTCAGGTGGAATTGAACCTTATTCAAGTTTGGGCATTGATTGA 1203 0.4722 MSTPYLHSAPTPSPSFSPITTSRFFQTSRVAFRNAVRCKAIEAVQLENGRPSANEVAGGNAIPSYVVAPNARIRDLVHRNDTRLRIFSGTANPALSQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSGGIEPYSSLGID 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00300 400 CDD PRTases_typeI 243 355 IPR000836 -
Viun10g00300 400 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 84 394 IPR037515 GO:0004749
Viun10g00300 400 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 84 200 IPR029099 -
Viun10g00300 400 Gene3D - 227 370 IPR029057 -
Viun10g00300 400 NCBIfam ribose-phosphate diphosphokinase 85 387 IPR005946 GO:0000287|GO:0004749|GO:0009165
Viun10g00300 400 SUPERFAMILY PRTase-like 149 385 IPR029057 -
Viun10g00300 400 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 83 388 IPR005946 GO:0000287|GO:0004749|GO:0009165
Viun10g00300 400 SMART Pribosyltran_N_2 84 200 - -
Viun10g00300 400 Gene3D - 87 385 IPR029057 -
Viun10g00300 400 FunFam Ribose-phosphate pyrophosphokinase 87 239 - -
Viun10g00300 400 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 208 223 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Viun10g00300 400 Pfam Phosphoribosyl synthetase-associated domain 285 388 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00300 Viun-Chr10 2467645 2478574 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00300 K00948 - gmx:100789585 719.153