Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00232 ATGTATGGCGGTGATGAAGTATCAGCTATTGTAATTGACTTGGGTTCACACACGTGTAAAGCTGGTTATGCCGGTGAAGATGCTCCCAAGGCCGTGTTTCCGTCTGTTGTTGGAGCAATTGATCAAATGGATGTTGATGAAGCAGATGATGATGCTGAGAAGAACTCTGCCTCAGTTGGGGAATCAAAGAATAATCTTAGAAATGCTGATTCTGACAAGGCTAAGGGAAAGAGGAAATTGTTTGTAGGATCACAGTCGTTGGGGTACCGTAGAGATCATATGGAGGTGCTGTCTCCATTTAAGGATGGAATTGTAGCTGATTGGGATATTGTTGATAGCATATGGGATCATGCCTTCAGGGAGTGCCTATTGATTGATCCTAAAGAGCATCCTATGCTCCTGGCAGAACCTTCTTCAAACTCTCAACAGCAGAGAGAAAGGACGGCAGAGCTTATGTTTGAGAAGTACAAAGCGCCTGCATTGTTTTTGGCGAAGAATGCTGTTCTGACTTCCTTTGCTTCAGGGCGTGCTACATCATTGGTTGTTGATGGTGGTGGAGGGTCAACTACAATTGCACCAGTACACGATGGTTATGTTCTTCAGAAGGCTGTGGCAACTTCTCCAATTGGAGGAGAATTTCTTACAGATTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTACGATGAAACCGCGCTATTCCTTTAGGAGAAAGGAAATACGCCCCGGAGAGTTTCAGACGGTAGATCTTGATTTTCCAAATACAACTGAAAGCTACAAACTCTATTCACAGAGGGTGATTGCTAGTGATGTCAAGGAATGTGTGTGCCGTGCTCCAGATACTCCTTACGATGAGAGTGCATATTCAAACATCCCAATGACCTCGTATGAGCTTCCTGATGGCCAGACAATTGAAATTGGAGCTGACAGATTTAAGATTCCAGATGTTCTTTTCAATCCGTCACTGGTTCAGTCAATTCCTGGCATGGAGAGCTTTGCTGAAATTGCTCCTTCAGTTCGTGGCCTTCCTCAAATGGTCATTGAAAGCATTAACAAGTGTGATGTAGACATTCGAAGAGAGTTGTTTAGTAGTATACTGCTTGCTGGTGGTACAGCTTCAATGCAACAACTGAAGGAACGACTTGAGAAAGACTTGCTAGAGGAGTCTCCTCAAGCTGCCAGAGTAAAAGTATTGGCCAGTGGGAATGCTACTGAAAGAAGGTTTAGTGTTTGGATAGGGGGTAGTATACTGGCATCTCTTGGTTCCTTCCAGCAAATGTGGTTCTCCAAATCCGAGTATGAGGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCATGA 1341 0.4407 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDEADDDAEKNSASVGESKNNLRNADSDKAKGKRKLFVGSQSLGYRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDGGGGSTTIAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGITMKPRYSFRRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIASDVKECVCRAPDTPYDESAYSNIPMTSYELPDGQTIEIGADRFKIPDVLFNPSLVQSIPGMESFAEIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00232 446 Gene3D Actin; Chain A, domain 4 211 324 - -
Viun10g00232 446 SUPERFAMILY Actin-like ATPase domain 175 445 IPR043129 -
Viun10g00232 446 SUPERFAMILY Actin-like ATPase domain 5 182 IPR043129 -
Viun10g00232 446 Gene3D - 391 446 - -
Viun10g00232 446 PANTHER ACTIN 9 439 IPR004000 -
Viun10g00232 446 SMART actin_3 7 446 IPR004000 -
Viun10g00232 446 Gene3D - 182 385 - -
Viun10g00232 446 Gene3D - 1 181 - -
Viun10g00232 446 MobiDBLite consensus disorder prediction 48 72 - -
Viun10g00232 446 FunFam actin-related protein 4 388 446 - -
Viun10g00232 446 CDD NBD_sugar-kinase_HSP70_actin 101 205 - -
Viun10g00232 446 FunFam Actin-related protein 4 1 184 - -
Viun10g00232 446 Pfam Actin 4 445 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00232 Viun-Chr10 1702270 1719557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00232 1 445 Miscellaneous Gene Families AT3G53750 35.938 1.59e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00232 K11340 - gmx:100785066 835.869