Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00148 ATGGGAATCCTCGCTTTGCCCTTAGTCATCTCCCTTCTCAAACCCCACGCCACCACTCGCCTCTGCCTCTCTCACTCCCTCCTCCGCCGCCGCCACTTCGCCACCACCGTCTCCGCCACCACCACTCCCCATTCCCCTCCTCCACCTCCACCTTCACCTTCGCTCTCACGCCACTCGTCTGCTTCAACTCAGTCCGACAATCGTTCCGCTAACCCCCCAACCCTCACCTTCCAGCAAGCCATTCAGCGCCTTCAGGAATACTGGGCTTCTGTTGGATGCTCCATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGCCCTGAACCATGGAATGTCGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACATACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCTCAGGATCTATTTATCCGCAGCCTCACTGCTTTAGGTATCGATGTTACTGCACATGATATACGATTTGTGGAAGATAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATTTGGATGGATGGTATGGAGATTACACAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCTGTATCTGTGGAAATTACTTATGGCCTTGAGCGTATCCTTATGTTACTGCAAGGGGTTGATCACTTCAAGAAGATAAAGTATTCTGATGGAATTACATATGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATACTACTTGGAGCATGCTAGTGTTGATCACGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCTCGTACCTTACTTTCTTCTGGCTTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCCTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGCTATTTTGGCCGCATGCGTAGTTTGGCTCGCCAATGTGCTCAACTTTGGCTGAAGACAAGAGAGATGCTTGGCTTTCCCCTTGGTTTTATCTCTGAACCTGATCATTTTGTATTGCCAAAAGGAGTTTTGGAAGCTGCATGTGGGAAGGTGCATGATCATTCCAGAGTATTTGTTCTTGAAATTGGGACTGAAGAGATACCACCTCAAGATGTTGTTGATGCCAGTAATCAACTGAAAGATTTAATGCTGCAACTGCTTGAACGGCAAAGGTTAAACCATGGTGAAGTGCAAGCATTTGCCACTCCACGTAGATTAGTGGTTGCTGTTGAAAATCTTTACACAAAACAGGCTGAAAAGGAGGTTGAAGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAATCCAACAAAGGCCATTGAGGGTTTTTGTCGTAGATACTCTGTACCACTGGACCTAGTATACAGAAAGGTCGATGGAAAAACAGAATATGTTTATGCACGTGTAAAGGAGTCTTCAAGATATGCTTTGGAGGTCTTGTCTGAAGATTTGCCTGCTGCTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTAGCTCTTCATGGAGATGTAGTTGTCCCATTTACGTTTGCTGGGGTGACAAGCGGAAACATGTCTTGTGGTCTTCGTAATACTTCTTCAGCTGTTGTCCAGGTGGAAAAGGCAGAATCTTATTCAGTTGCAATTAACAATGCAGGAATCAAAGTTTCAGTTGAGGACCGTAAGAAAATTATTTTTGAGCAATCTAATGCATTAGCAAAAGGTGTAAATGGCCAAATTCTTATTCCAAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCTCCTTTTCCCGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTTTTAACAATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCAAATGGACAATTATTGCCTTATTTCGTTGCTGTTGCAAATGGAGTAATTGATGAGACTACTGTGAGGAAAGGAAATGAAGCTGTGCTCAGAGCTCGCTATGAAGATGCAAAGTTCTTTTATGAGATGGACACTCGTAAGAGGTTTACAGAGTTCCGAAAGCAACTGAAAAACATTCTATTTCATGAGAAGCTTGGGACCATGCTTGATAAGATGACTCGTGTTGAAAACATGGTTGCTGAACTAAGTTGCATCCTAGACATCAGTGAAGATGTGCAAGATATTATCCGTGATGCTGCCTCTCTTGCAATGTCTGATCTTTCCACTGCAGTTGTCACTGAATTTACCTCACTTTCGGGAATTATGGGGCGTCACTATGCCCTTAGAGATGGATACTCGGAGCAGATTGCAGAGGCCTTGTTTGAGATCACACTTCCTAGATTTTCTGGGGACACGCTTCCTGAAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTTCTGCTGGTTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGCGAAGAATTTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAAATCTAGATTTTAAAAAGGCCCTGGAACTTGCTGCAGAAGTCCAGCCCATTAAAGTAGATCCTCATGTAATCGATGATGTACTTCAATTTGTTACACGAAGGTTGGAGCAATTTCTGGTTGACAAGGGGGTGAATGCAGAGTTTGTGCGGTCAATCCTTGTTGAAAGAGCAAATTTTCCCTGTCTTGCAGCAAAATCAGCATATAAAATGGAAAAATTATCAAGAGGGAACCTTTTTCCTAAAGTTGTTGAAGCATACTCTCGACCAACTAGAATTGTCCGTGGGAAGGAAGATGAACTTCATACGGAGGTGGATGAGGCTGCTTTTGTGACAAATGAAGAGAGAGTTTTATGGAACACGTTTTTGTCTGTTAAAAAGACTATCCATCCTGGTCTTGACATAGATGATTTTGTAGAAACTTCATGTCAGTTGATACAGCCACTTGAGGATTTCTTTAACAATGTCTTTGTAATGGTGGACGATGACAAGATCAGAGTAAACAGGTTAACTTTGCTAAAAGGAATTGCTGATCTTCCTAAAGGAATAGCAGATCTCACTATCCTACCTGGATTTTAA 3216 0.4269 MGILALPLVISLLKPHATTRLCLSHSLLRRRHFATTVSATTTPHSPPPPPPSPSLSRHSSASTQSDNRSANPPTLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLTALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARTLLSSGFAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDHFVLPKGVLEAACGKVHDHSRVFVLEIGTEEIPPQDVVDASNQLKDLMLQLLERQRLNHGEVQAFATPRRLVVAVENLYTKQAEKEVEVRGPPVSKAFDHEGNPTKAIEGFCRRYSVPLDLVYRKVDGKTEYVYARVKESSRYALEVLSEDLPAAIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFTFAGVTSGNMSCGLRNTSSAVVQVEKAESYSVAINNAGIKVSVEDRKKIIFEQSNALAKGVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFVAVANGVIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFTEFRKQLKNILFHEKLGTMLDKMTRVENMVAELSCILDISEDVQDIIRDAASLAMSDLSTAVVTEFTSLSGIMGRHYALRDGYSEQIAEALFEITLPRFSGDTLPESDAGIVLAIADRLDSLVGLFSAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKKALELAAEVQPIKVDPHVIDDVLQFVTRRLEQFLVDKGVNAEFVRSILVERANFPCLAAKSAYKMEKLSRGNLFPKVVEAYSRPTRIVRGKEDELHTEVDEAAFVTNEERVLWNTFLSVKKTIHPGLDIDDFVETSCQLIQPLEDFFNNVFVMVDDDKIRVNRLTLLKGIADLPKGIADLTILPGF 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00148 1071 CDD GlyRS_alpha_core 76 354 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 NCBIfam glycine--tRNA ligase subunit alpha 76 360 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 FunFam Glycine--tRNA ligase alpha subunit 69 278 - -
Viun10g00148 1071 SUPERFAMILY HD-domain/PDEase-like 718 849 - -
Viun10g00148 1071 SUPERFAMILY Class II aaRS and biotin synthetases 76 354 IPR045864 -
Viun10g00148 1071 PRINTS Glycyl-tRNA synthetase alpha subunit signature 150 170 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 PRINTS Glycyl-tRNA synthetase alpha subunit signature 315 331 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 PRINTS Glycyl-tRNA synthetase alpha subunit signature 181 205 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 PRINTS Glycyl-tRNA synthetase alpha subunit signature 129 144 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 PRINTS Glycyl-tRNA synthetase alpha subunit signature 207 227 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 PRINTS Glycyl-tRNA synthetase alpha subunit signature 230 245 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 Pfam Glycyl-tRNA synthetase beta subunit 390 933 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 MobiDBLite consensus disorder prediction 36 73 - -
Viun10g00148 1071 NCBIfam glycine--tRNA ligase subunit beta 390 1066 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 Hamap Glycine--tRNA ligase beta subunit [glyS]. 387 1068 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 Gene3D Bira Bifunctional Protein; Domain 2 62 278 IPR045864 -
Viun10g00148 1071 FunFam Glycine--tRNA ligase, chloroplastic/mitochondrial 2 279 358 - -
Viun10g00148 1071 Pfam Glycyl-tRNA synthetase alpha subunit 77 354 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 75 355 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 76 350 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 MobiDBLite consensus disorder prediction 56 73 - -
Viun10g00148 1071 Gene3D Class II aaRS and biotin synthetases; domain 2 279 358 - -
Viun10g00148 1071 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 741 1033 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Viun10g00148 1071 PANTHER GLYCYL-TRNA SYNTHETASE 74 1069 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00148 Viun-Chr10 917243 941096 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00148 K14164 - gmx:100787365 1887.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00148 10 917243 941096 Viun10g00148 10 917243 941096 ECH